Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02608 ATGTATGGGAGAAAAGCTTGCCAACTTGTGAAAGAATTTGCAAGTGGAGAAAAGGGTCAGCTCACACCATTTAATAATGACTTGTTTGACCAAGTAGTTGCAGAATGCAACCAACATCATGGTGAGCTTCAGTCCTTGATAAGGAAGATGCAGGAAGAAGGTTTGGATGTCCAGACGGCTAGAAATGCTGACCACTACGGAGCCCTCATCCACCTATTTTCTATAGTCCGAAATAAACGTTGTCTAACAGCCTATGTGTATAACCGAGCAGAAACTATACGGAACTTGTTATGGAAGATAGGACCCGTGATTCCTAAAGAAATTGAAGAGAAGCTTAGTCATTGGGAGGAAGAGTATTTCAAGAAGCATTCTGCAGCATTGAAAACTTATATGTCAAAAGTGCTGGTTGATCTGACTGTGGATATGGTACCACCAAAAGATCCATACATACAAGTAAGGGTCCTTGAAGACATAAGAGAAGGCATTGTACTTAGTGATGATAAAAGTCCCAACTTTGCCCGACATTCCATGCACTTTCTGAAACGAACTGATGCTGAGAAATATATCTCAAGGGGCTTAATGGAGGAGCTCACTGGTTGA 600 0.415 MYGRKACQLVKEFASGEKGQLTPFNNDLFDQVVAECNQHHGELQSLIRKMQEEGLDVQTARNADHYGALIHLFSIVRNKRCLTAYVYNRAETIRNLLWKIGPVIPKEIEEKLSHWEEEYFKKHSAALKTYMSKVLVDLTVDMVPPKDPYIQVRVLEDIREGIVLSDDKSPNFARHSMHFLKRTDAEKYISRGLMEELTG 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02608 199 CDD GINS_B_Psf1 148 197 - -
Trre12g02608 199 SUPERFAMILY GINS helical bundle-like 1 146 IPR036224 -
Trre12g02608 199 Gene3D - 1 134 - -
Trre12g02608 199 CDD GINS_A_psf1 3 134 IPR005339 GO:0000811|GO:0006260
Trre12g02608 199 Pfam GINS complex protein 47 116 IPR021151 -
Trre12g02608 199 PANTHER PARTNER OF SLD5 1 198 IPR005339 GO:0000811|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02608 Trre-Chr12 31223312 31225371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02608 1 199 Core DNA Replication Machinery Family AT1G80190 69.307 1.35e-104 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02608 K10732 - qsu:112021696 334.339