Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02607 ATGAAAAGCAAAGTCAGTGGCTTTTACTTGATGGACTTCAGTCCTGATGAACATGAAGCAGCTGATGGTCTTGTTTTATTGCAAACACTGTTTGAAAAGAAGAAGATTGCTAGAAAACTGAAAATTACTTTTGGAGGCAAAATGCTTTGTGAAAAAACCTACAACAACAATGTTTGTTCGGTCGTTTCAAATAACAAGGTTAGTTCATCACCACAAATCATTGTTCCTAATGTCGTTATGGAAAATGAAGACAACCCATCAAATATACCAACGATTCCTGGCGTGGCGAACAATAATATTGTTAGGTGTTGCAAGCCTTTTGAGAAGAAACTATCAACGAGTGATTTGAAGGTTGATCTAAATAGATTGTTTTTGGACAAGGGCCATGTGAAAAAATATTTTTTACCCTTGTTGAAAGAAGGCGAAGATGTTGAAGAAGGAATAGACGTCGTTGTATATGACATGCAAGGCAAAATGTTCAACATGAAGTTCAAGTTTTGGAGCGGAAAATTTTATGTTCTTAATGGAGGGTGGAAGACTTTCTTCAAATCGCATTCTTTGCTAGCAAATCAAGATCATGTTACAGTGTGGATGTTTCGTCATTTTGAAACCGGCAATTTGTGTTTTGCTCTCAGTGTGAAAAGAGTGTAG 651 0.3656 MKSKVSGFYLMDFSPDEHEAADGLVLLQTLFEKKKIARKLKITFGGKMLCEKTYNNNVCSVVSNNKVSSSPQIIVPNVVMENEDNPSNIPTIPGVANNNIVRCCKPFEKKLSTSDLKVDLNRLFLDKGHVKKYFLPLLKEGEDVEEGIDVVVYDMQGKMFNMKFKFWSGKFYVLNGGWKTFFKSHSLLANQDHVTVWMFRHFETGNLCFALSVKRV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02607 216 SMART B3_2 107 215 IPR003340 GO:0003677
Trre12g02607 216 CDD B3_DNA 107 209 IPR003340 GO:0003677
Trre12g02607 216 ProSiteProfiles B3 DNA-binding domain profile. 108 215 IPR003340 GO:0003677
Trre12g02607 216 Gene3D - 93 215 IPR015300 -
Trre12g02607 216 SUPERFAMILY DNA-binding pseudobarrel domain 107 204 IPR015300 -
Trre12g02607 216 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 95 213 IPR005508 GO:0003677
Trre12g02607 216 Pfam B3 DNA binding domain 107 190 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02607 Trre-Chr12 31221640 31222290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02607 77 211 B3 DNA Binding Superfamily AT4G03170 41.606 3.63e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre12g02607 B3 6.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02607 - - tpra:123915381 351.288