Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02605 ATGCAAATTCCGCTTGTTACCATTCAAATTTCAAACCCTCCAACGGTCAAATTTTCTCATTTTCAAAAGTTCAAACCGTTTATGACTATTCTTTTATCAATGGAAGATAATGAATGGAATCACTATGATCCTCTTCTTCTCACTGACGTTTCTTTTCAACAACAACAAACCATTTCCACTAGTGTTTCACAATTATCTCTTAGCTCTCTGAATTCAGCTATGGAGGCTGATCCCCAATCTTGTGGTGGAAACCCTAGTTATGGATTGTCTCCGGAAAATGAAAGCTTTGAAAGGAACAGTTTGCAATTTGATGATCCAATTGTGAAAAATTTAGTTGATGGACGATCGATATTAGGGTATTCTATGAATTCGCCTGATTTGGTGATCTGTTCTGGCTCACCAGATATTGCTGGAATCAGTTATTGTGATTCTCCTGAGATTTTGAAGAGCAAAAATTGCTTCAATTTGGATTCATCTATGGAACTTTCTCTTGAGAATGGAATCAATGCATCGGAAGTTGAAGTTTGCAATGTCCATAAGACTCCAACTGTTAAATTTTCCAATTTATGTCAAACTATTGAACCGGAGGAAGAGTTACTATCACCTGAAGCCTCATTCGAGCTTCATCCGCCGCCGATAACAAACGAAGAGTCGCCTCGAGATTATTCTCTTAGAGATAATGAAATGTTGGAAGATGCTAGAGTGTCTCAGGAGGCAGAATTGGAATGCTCAGAAGATGTTGAGGATATTGGGGTTGAAGAGAAGTTTGTGAAGCTGAAAAGAGATTTCGAGTGTCAGAGAAAAGAGCTGGCAGTAACTAGGAGGGAGTTGGGGGAGCTCAAGAAGGAGAATCAACAGAAAAGTAGTGAATGTCAAGAAGCTTTGAAGTCGTTAAAGGAGCTTCAGAATGAGCTAATGCGCAAGTCGATGCACGTAGGATCTTTAGCATTTGCTATTGAAGGGCAAGTGAAAGAGAAAAGCAAGTGGTTTATATCACTAAGAGACTTGACGAGGAAATTGAAGATTATGAAAATGGAACACATGAAGCTATTAGAGGAAGCAGAAGCATACAAGAAATATGAAGAATATATAAGTGAATTTGGAGTCATCGTCAAGTCTAAAATGAATGAACAACTAGCGTCACATGAAGATCTCAAGTCCAAATATATCGAAGGGGCTATGGTTCAAAAAGAGCTTTACAATAAGGTATTGGAGTTGAGAGGAAACATAAGGGTCTTTTGCCGGTGTAGGCCACTCAATGCCGAAGAGATAAAAGGAGGAGCCGCAATGGCCTTAGATTTTGATTCTGCTAAAGATGGCGAGCTTACTGTAATGTCAAATGGATCTCCAAAAAGGACTTTTAAGTTTGATGCTGTGTTTGGCCCTCAAGTTGAACAAGCTGATATCTTTGAAGACACTGTACCATTTGCAACCTCAGTTTTAGATGGATACAATGTATGCATTTTTGCATACGGACAGACTGGTACAGGAAAAACCTTCACAATGGAGGGCACAGAAGACGCTCGCGGAGTTAATTTCAGGACTCTTGAGAAAATGTTTGATATAATCAAGGAAAGACAATCCCTCTATCGTTATGATATTTCCGTAAGTGTCTTAGAAGTGTACAACGAGCAAATAAGAGATTTGCTGGTTTCAGGAAATCATCCAGGAATGTCTGGAAAAAGATTGGAGATAAGGCAATCTGGTGAAGGAATGCATATTCCGGGGTTGGTCGAAGCACATGTGAACAATATGAATGAAGTGTGGGAAGTCCTACAAACTGGTAGCAATGCAAGGGCTGTAAGCTCAACCAATGCGAACGAGCACAGTAGCCGATCTCACTGCATTCACTGTGTCATGGTTAAGGGAGAAAATCTGTTGAATGGAGAACACACTAGAAGCAAGTTATGGCTTGTGGACTTAGCAGGCAGTGAAAGAGTTGCAAAGACAGAAGTTCAAGGTGATAGATTGAAGGAGACACAAAATATTAATAGATCTCTTTCCGCACTTGGTGATGTCATTTCAGCTCTTGCAACCAAAAGTTCTCACATCCCTTTCAGGAACTCTAAGCTTACACACTTGTTACAAGACTCATTAGGAGGAGATTCAAAGACACTCATGTTTGTACAGATCAGTCCTAATGAAAACGATTTGGGCGAGACAATTTGCTCTCTAAACTTTGCTAGTAGAGTAAGGGGAATAGAATTGGGCCCTCCAAAAAAACAGTGGGACACTATTGAACTTCTGAAACATAAACAGATGGCTGAGAAAACTAAACAAGAGCTAAAGCTGAAGGACTTTCAAATCAAGAAGATGGAGGAAACAATCCATGGCTTTGAGTCCAAAATGAAGGAAAAGGATCATAAAAACAAAGCTCTTCAAGATAAGGTCAAGGAACTGGAATCACAACTTATGATTGAGAGAAAGCTAGCGCGTCAACATGTAGACTCAAAGATAGCTGAGCAACATCAAATGAAGAATCAAGAAGAGCAAAACAATCCAATTTGGAGAGCAACACCACTTGCAAATCGACCATTAGCAACTCTCAAGAATTTTAATGATCCAGCTAAACCTTTAACCGAGAACAACATCTTAAAACCTTACAATATACCCTTTTCTACAATAGAAAGCTCCATTGAGTGTATTGATCACAATGAGAAAGAAAACAACCCCGACATGGCCGATAACAAATCACTACTTCCAAAAAAGACATCAAGAGCTTCAATGTGCACAATGACACCGCGCGTTATTCCTTCGGCAACTATTTCAAGAAGAAACTCTTTGATTCCACTCCCAAACTTAACACATTTTCAATCAACACCATTCATACCAAAGTTATCAAACCAAGAAGTAAATGAGGAATCAGAAACCTCACAAGAGAGTCCTAAAGAAGTTAAAAGTGGTGTGAAGAAGATAGGTAGCATACTAAGAAGAAGCATACATAAGAAAGGTCAAGGGAGGTCTCCATTACAACAGCATATGAGAAAAGTTGGTGGTGTAAATGTAGGGATGGAGAAAGTGAGAGTTTCTATTGGAAGTAGAGGGAAATTGGCACAAAGGGGGGTGCAGGTTGGAAATGGTAGAAGAGGTGGGGGTGCTAAAGAGATTCAACAGAAGAATAGTCATAAGGACAAGGAAAGAGGATGGATATAA 3153 0.3952 MQIPLVTIQISNPPTVKFSHFQKFKPFMTILLSMEDNEWNHYDPLLLTDVSFQQQQTISTSVSQLSLSSLNSAMEADPQSCGGNPSYGLSPENESFERNSLQFDDPIVKNLVDGRSILGYSMNSPDLVICSGSPDIAGISYCDSPEILKSKNCFNLDSSMELSLENGINASEVEVCNVHKTPTVKFSNLCQTIEPEEELLSPEASFELHPPPITNEESPRDYSLRDNEMLEDARVSQEAELECSEDVEDIGVEEKFVKLKRDFECQRKELAVTRRELGELKKENQQKSSECQEALKSLKELQNELMRKSMHVGSLAFAIEGQVKEKSKWFISLRDLTRKLKIMKMEHMKLLEEAEAYKKYEEYISEFGVIVKSKMNEQLASHEDLKSKYIEGAMVQKELYNKVLELRGNIRVFCRCRPLNAEEIKGGAAMALDFDSAKDGELTVMSNGSPKRTFKFDAVFGPQVEQADIFEDTVPFATSVLDGYNVCIFAYGQTGTGKTFTMEGTEDARGVNFRTLEKMFDIIKERQSLYRYDISVSVLEVYNEQIRDLLVSGNHPGMSGKRLEIRQSGEGMHIPGLVEAHVNNMNEVWEVLQTGSNARAVSSTNANEHSSRSHCIHCVMVKGENLLNGEHTRSKLWLVDLAGSERVAKTEVQGDRLKETQNINRSLSALGDVISALATKSSHIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDLGETICSLNFASRVRGIELGPPKKQWDTIELLKHKQMAEKTKQELKLKDFQIKKMEETIHGFESKMKEKDHKNKALQDKVKELESQLMIERKLARQHVDSKIAEQHQMKNQEEQNNPIWRATPLANRPLATLKNFNDPAKPLTENNILKPYNIPFSTIESSIECIDHNEKENNPDMADNKSLLPKKTSRASMCTMTPRVIPSATISRRNSLIPLPNLTHFQSTPFIPKLSNQEVNEESETSQESPKEVKSGVKKIGSILRRSIHKKGQGRSPLQQHMRKVGGVNVGMEKVRVSIGSRGKLAQRGVQVGNGRRGGGAKEIQQKNSHKDKERGWI 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02605 1050 ProSiteProfiles Kinesin motor domain profile. 409 734 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g02605 1050 CDD KISc_C_terminal 407 736 - -
Trre12g02605 1050 MobiDBLite consensus disorder prediction 1011 1050 - -
Trre12g02605 1050 Coils Coil 263 311 - -
Trre12g02605 1050 PANTHER KINESIN-LIKE PROTEIN KLP-3 229 932 IPR027640 GO:0003777|GO:0007018
Trre12g02605 1050 Pfam Kinesin motor domain 415 734 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g02605 1050 FunFam kinesin-like protein KIN-14R 354 736 - -
Trre12g02605 1050 PRINTS Kinesin heavy chain signature 604 621 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g02605 1050 PRINTS Kinesin heavy chain signature 684 705 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g02605 1050 PRINTS Kinesin heavy chain signature 483 504 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g02605 1050 PRINTS Kinesin heavy chain signature 635 653 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g02605 1050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 772 IPR027417 -
Trre12g02605 1050 Gene3D Kinesin motor domain 404 778 IPR036961 -
Trre12g02605 1050 MobiDBLite consensus disorder prediction 948 969 - -
Trre12g02605 1050 ProSitePatterns Kinesin motor domain signature. 634 645 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre12g02605 1050 SMART kinesin_4 407 742 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g02605 1050 MobiDBLite consensus disorder prediction 1035 1050 - -
Trre12g02605 1050 Coils Coil 333 353 - -
Trre12g02605 1050 Coils Coil 755 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02605 Trre-Chr12 31187480 31192967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02605 351 761 Calmodulin-binding Proteins AT5G65930 39.614 1.37e-78 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02605 K10406 - gmx:100817247 1494.56