Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02603 ATGGCATTGGAGTTAAGTTTCCATTCAAAAAATATGTTTTCTTACTTGTACATGATTCTATTGTTTAGCTTTGGAATCTTTCTTGTAAGTTCAATCAATGAAGAGGGTTCAAATCTTTTGAAGTTCAAAAGATCACTTTTGGATTCAAATCATAATCTTGTTAACTGGAATGTTTCTGATTTAACTCCATGCAATTGGACTGGTGTTTATTGTGTTGATTCAATAGTTACTTCTGTTAATCTTTACCACCTTAATCTCTCTGGTAATTTGTCTTCTAAAATCTGTAATCTTCCATGGTTAGTTGAGTTGAATGTCTCTAAAAATTTCATCTCTGGTCCAATTCCTGATGGTTTTGTTAACTGTGATAAACTCGAGGTTTTAGACCTTTGTACAAATAGGTTTCATGGACCATTTTTGACTCCTATTTGGAAAATCAAAACACTTAGGAAGCTTTACCTTTGTGAAAATTACATGTATGGTGAAATACCAGAAGAGATTGGTAAATTAACATCACTTGAAGAGTTAGTGATTTATAGCAACAACTTAACAGGAAGCATTCCTGGATCGATCAGTAAGTTGAAACGGCTTAGAGTTATTCGGGCAGGTTTAAATGGTCTCTCTGGAAAATTACCTTCAGAAATCAGTGAGTGTGAAAGCTTAGAAACATTAGGGTTAGCACAGAATCAGTTAGTAGGTTCTATTCCAAAAGAGCTTCAAAAGCTTCAGAACCTTACTAATTTGATTCTATGGCAAAACTCTTTTTCTGGTGAGCTTCCTCCTGAAATTGGAAATATTAGTAGCCTTGAATTAATTGCTTTGCATCAAAATTCATTAATCGGTGATGTCCCGAAAGAGCTCGGGAGGTTACCGCGGTTGAAGAGGTTGTACATGTACACAAACCAGTTGAATGGAACAATTCCACCTGAGTTAGGAAACTGTACTAATGCTATTGAGATTGATCTATCTGAAAACCATTTGATTGGTATCATTCCTAAAGAGTTAGGTCAAATCTCTAATCTTACCTTGCTTCACCTATTTGAAAACAATTTGCAGGGTCATATTCCAAAGGAGCTTGGAAATTTGAGGCTGCTGAGGAATTTAGATTTGTCGTTGAACAACTTAACAGGTATAATTCCGTTGGAGTTTCAAAATCTTAAACTCATGGAGGATTTACAGCTATTTGATAATCAACTTGAAGGTGTGATTCCACCTCATCTTGGAGCTTTTAGAAACCTTACAATTCTTGATATATCTTCAAATAATCTTGTCGGTATGATACCAAACCGTCTTTGTGAATATCAGAAGCTTCAATTCCTTAGCCTTGGATCAAATAGGCTCTTTGGAAATATTCCTTATAGATTGAAAACTTGTAAGTCACTTGTGCAGTTAATGCTTGGGGATAATCTTTTGACAGGAAGTTTACCTGTTGAATTGTATGAACTTAATAATCTTACCGCGCTCGAGCTTCATCAGAATAGATTCTCCGGGCTGATTAGCCCTGGAATTGGTAAACTTGGGAATCTAGAGAGGCTTCACTTGTCAGATAATTACTTTTCAGGTCATCTACCTTCTGAGATTGGAAATTTGTCACAGCTTGTAACATTCAATGTTTCGTCTAACCGTTTCGGTGGAAGTATTCCATACGAGTTAGGAAACTGTGTGAAGCTGCAGAGACTTGATCTCAGCAGGAACAAGTTTACTGGTATGCTTCCAAGTTCAATTGGAAATCTTGTGAATTTGGAGCTACTAAAAGTTTCTGATAATATGCTTTCTGGAGAAATACCGGGTACTTTGGGGGACCTTATTCGTCTAACCGATTTGGAGCTCGGTGGAAATCGGTTTTCAGGAAGCATCCCTTTTCATTTTGGAAGACTTTCTGCTCTTCAGATAGCACTAAACTTGAGTCACAACAATCTTTCTGGTACAATTCCTGATAGCTTAGGGAGCTTGCAAATGCTAGAATCACTTTACTTAAATGATAATCAACTTGTCGGCGAAATTCCTTCATCAATTGGTGACTTGCTTAGTCTTTTAGTATGCAATGTATCTAACAATAAGCTGATAGGAACTGTTCCTGACACAACCACATTTAGAAAGATGGATTTAACAAATTTTGCCGGGAACAACGGTTTGTGCCGTGAAGGTACTAATCATTGTAATCCATCTTTAGCTTCATCTCATCACGCAAAGCCAATGAAAGACGGTTTATCAAGGGAACAGATAGTGAGTATTGTCTCTGGTGTGGTTGGTTTTGTGTCTCTTATTTTCATAGTTTGTATATGTTGGACTATGATGAGACGCCGCCGCAGCGATTCTTTTGTTTCGATTGAAGAACAAACAAAGCCTCATGTTCTAGATAATAGCTATTACTTTCCAAAAGAAGGCTTCACTTACAATGATCTCTTGGAAGCTACTGGGAATTTTTCAGAAAGTGAAGTTATAGGAAGAGGAGCTTGTGGAACTGTCTACAGAGCTGTTATGAATGATGGTGAAGTTATTGCTGTCAAGAAACTGAATACACGCGGAGGAGAAGGAACAAGCGTCGACCGAAGCTTCCTCGCAGAGATTTCAACTCTTGGAAAGATCAGGCACAGGAACATTGTGAAGTTGCATGGATTTTGTTATCATGAGGATTCTAATCTTCTCTTGTATCAATACATGGAAAATGGAAGCCTTGGTGAAAAACTTCATAGTTCAAGTTCAAAAACATGTGAACTGGATTGGAACATTAGATATAGAATAGCTCTAGGAGCAGCAGAAGGCTTATGTTATCTTCATTATGATTGTAAACCTCAAATCATTCATCGCGATATTAAGTCGAACAATATTTTGCTTGATCAAAGTTTTCGGGCTCATGTTGGAGACTTTGGATTGGCAAAGTTGATTGATTTTTCATTATCAAAATCTATGTCTGCTGTTGCTGGATCATATGGCTACATTGCCCCAGAATATGCTTACACCATGAAGGTGACTGAAAAATGTGACATCTATAGTTTTGGGGTAGTTTTGCTGGAACTAGTTACCGGGAAGTCACCGGTTCAACCATTGGAACAAGGTGGTGATTTAGTTAACTGGGTGAGAAGATCAATTCAAGCATCAGTACCTACATCTGAATTATTTGATAAGAGATTGGATTTGAGTGAACAAAAAACTGTTGAAGAAATGTCTCTTATTCTTAAAATTGCACTGTTTTGCACCAGTTCATCTCCACTTAATAGGCCTACAATGAGAGAGGTAATTGCAATGTTGATTGATGCTAGAGAATATGTCAACCAATCACCAACCTCTCCTTCATCTGAATCTCCACTTGATGAAGATAAAAGTTCTTCTTCATAA 3336 0.3714 MALELSFHSKNMFSYLYMILLFSFGIFLVSSINEEGSNLLKFKRSLLDSNHNLVNWNVSDLTPCNWTGVYCVDSIVTSVNLYHLNLSGNLSSKICNLPWLVELNVSKNFISGPIPDGFVNCDKLEVLDLCTNRFHGPFLTPIWKIKTLRKLYLCENYMYGEIPEEIGKLTSLEELVIYSNNLTGSIPGSISKLKRLRVIRAGLNGLSGKLPSEISECESLETLGLAQNQLVGSIPKELQKLQNLTNLILWQNSFSGELPPEIGNISSLELIALHQNSLIGDVPKELGRLPRLKRLYMYTNQLNGTIPPELGNCTNAIEIDLSENHLIGIIPKELGQISNLTLLHLFENNLQGHIPKELGNLRLLRNLDLSLNNLTGIIPLEFQNLKLMEDLQLFDNQLEGVIPPHLGAFRNLTILDISSNNLVGMIPNRLCEYQKLQFLSLGSNRLFGNIPYRLKTCKSLVQLMLGDNLLTGSLPVELYELNNLTALELHQNRFSGLISPGIGKLGNLERLHLSDNYFSGHLPSEIGNLSQLVTFNVSSNRFGGSIPYELGNCVKLQRLDLSRNKFTGMLPSSIGNLVNLELLKVSDNMLSGEIPGTLGDLIRLTDLELGGNRFSGSIPFHFGRLSALQIALNLSHNNLSGTIPDSLGSLQMLESLYLNDNQLVGEIPSSIGDLLSLLVCNVSNNKLIGTVPDTTTFRKMDLTNFAGNNGLCREGTNHCNPSLASSHHAKPMKDGLSREQIVSIVSGVVGFVSLIFIVCICWTMMRRRRSDSFVSIEEQTKPHVLDNSYYFPKEGFTYNDLLEATGNFSESEVIGRGACGTVYRAVMNDGEVIAVKKLNTRGGEGTSVDRSFLAEISTLGKIRHRNIVKLHGFCYHEDSNLLLYQYMENGSLGEKLHSSSSKTCELDWNIRYRIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDQSFRAHVGDFGLAKLIDFSLSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGKSPVQPLEQGGDLVNWVRRSIQASVPTSELFDKRLDLSEQKTVEEMSLILKIALFCTSSSPLNRPTMREVIAMLIDAREYVNQSPTSPSSESPLDEDKSSSS 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02603 1111 ProSiteProfiles Leucine-rich repeat profile. 363 384 IPR001611 GO:0005515
Trre12g02603 1111 SUPERFAMILY L domain-like 55 467 - -
Trre12g02603 1111 Gene3D Ribonuclease Inhibitor 386 727 IPR032675 -
Trre12g02603 1111 FunFam Predicted protein 186 282 - -
Trre12g02603 1111 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 283 385 - -
Trre12g02603 1111 Pfam Leucine rich repeat 555 614 IPR001611 GO:0005515
Trre12g02603 1111 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 409 723 - -
Trre12g02603 1111 ProSiteProfiles Leucine-rich repeat profile. 80 101 IPR001611 GO:0005515
Trre12g02603 1111 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 480 1084 - -
Trre12g02603 1111 MobiDBLite consensus disorder prediction 1091 1111 - -
Trre12g02603 1111 Gene3D Transferase(Phosphotransferase) domain 1 887 1103 - -
Trre12g02603 1111 SUPERFAMILY L domain-like 455 713 - -
Trre12g02603 1111 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 773 886 - -
Trre12g02603 1111 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 32 185 - -
Trre12g02603 1111 Gene3D Phosphorylase Kinase; domain 1 770 886 - -
Trre12g02603 1111 ProSiteProfiles Protein kinase domain profile. 808 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02603 1111 SMART serkin_6 808 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02603 1111 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Trre12g02603 1111 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Trre12g02603 1111 SMART LRR_typ_2 553 576 IPR003591 -
Trre12g02603 1111 SMART LRR_typ_2 650 674 IPR003591 -
Trre12g02603 1111 SMART LRR_typ_2 169 193 IPR003591 -
Trre12g02603 1111 SMART LRR_typ_2 409 433 IPR003591 -
Trre12g02603 1111 SMART LRR_typ_2 241 265 IPR003591 -
Trre12g02603 1111 SMART LRR_typ_2 361 384 IPR003591 -
Trre12g02603 1111 SMART LRR_typ_2 577 601 IPR003591 -
Trre12g02603 1111 SMART LRR_typ_2 505 529 IPR003591 -
Trre12g02603 1111 SMART LRR_typ_2 289 313 IPR003591 -
Trre12g02603 1111 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 887 1100 - -
Trre12g02603 1111 Pfam Protein kinase domain 809 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02603 1111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 933 945 IPR008271 GO:0004672|GO:0006468
Trre12g02603 1111 Gene3D Ribonuclease Inhibitor 265 385 IPR032675 -
Trre12g02603 1111 Gene3D Ribonuclease Inhibitor 191 264 IPR032675 -
Trre12g02603 1111 SUPERFAMILY Protein kinase-like (PK-like) 784 1083 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02603 Trre-Chr12 31163664 31167870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02603 57 1087 Receptor kinase-like Gene Family AT1G73080 38.812 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre12g02603 Pkinase 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02603 - - gmx:100818311 1792.7