Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02597 ATGATGTTGTACTCCGAGATTGAACAAGCTTGCAGCTTTTCAGAAAAAGGTCTTCAAGGTGCCTTCCTTTCCTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCCGAGAAGGAAGAGGCTGTCCAGAAAGAGCCCGAGACCCAGTTGGCAACAAACAAGAAGTCTCAGGCTCTTCGAAGTGGCCCTTCATCCTAA 201 0.4726 MMLYSEIEQACSFSEKGLQGAFLSYMSSPCHIELILSEKEEAVQKEPETQLATNKKSQALRSGPSS 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02597 66 MobiDBLite consensus disorder prediction 47 66 - -
Trre12g02597 66 Gene3D Ribosomal protein L22/L17 17 64 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trre12g02597 66 MobiDBLite consensus disorder prediction 41 66 - -
Trre12g02597 66 PANTHER 60S RIBOSOMAL PROTEIN L17 20 59 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02597 Trre-Chr12 30927699 30929141 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02597 19 59 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 68.293 4.42e-13 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02597 K02880 - gmx:100499784 75.8701