Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02596 ATGCGGTTTCGAGGAGAACCATTGTGTGATGCTGATCAGAAAGAATGCTTCTCACTTGGTTTGTCAGGTCAGGATATTGATATGGAAAGATTGAACAAGCTTGCAGCTTTTCAGAAAAAGGTCTTCAAGGTGCCTTCCTTTGTGACCTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCCGAGAAGGAAGAGGCTGTCCAGAAAGAGCCCGAGACCCAGTTGGCAACAAACAAGAAGTCTCAGGCTCTTCGAAGTGGCCCTTCATCCTAA 276 0.4601 MRFRGEPLCDADQKECFSLGLSGQDIDMERLNKLAAFQKKVFKVPSFVTYMSSPCHIELILSEKEEAVQKEPETQLATNKKSQALRSGPSS 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02596 91 MobiDBLite consensus disorder prediction 70 91 - -
Trre12g02596 91 PANTHER 60S RIBOSOMAL PROTEIN L17 49 84 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre12g02596 91 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02596 Trre-Chr12 30925245 30929141 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02596 21 84 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 45.714 2.64e-13 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02596 K02880 - gmx:100499784 75.485