Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02556 ATGGCTACGGTTGTCGCTGACATTTCAGCTGATGCTAACAAAATGGACTCAAAACCAAAGGCTGAATCTGAATTCAGTGTTCAGAAACTTGTTGACATGTTCACAAAGTTGAATCCTTTGGCTAAGGAGTTTTTTCCTTCTTCTTATTCTCCTAATCATGATCAGACTCGTCAGGGTTATAATCTGCTTACTCCTAACAATTTTTTGGTTAATACTAAGCCATCTGCTAATGACAATAACCAAAATAATCGAAGGAGGAGAAACAATTCTGCTCAAGGGAGGAGAAGGTTCAGTGGAAGATCACTAAAGGCTCAAAGGGAAGATAGCGTTAGAAGAACCGTATATGTTTCTGATATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCACCAATTGTGGACAAGTCATTGATTGCCGAATTTGTGGTGATCCGCATTCAGTTCTTCGTTTTGCTTTTGTCGAGTTTTCAGATGAACATGGAGCTAGGGCTGCTTTGAACCTTGGCGGTACTGTGCTTGGATACTATCCAGTCAGGGTCCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGGGAAATGTGTACCAGGACTGTCTATTGTACAAATATTGACAAAAAGATTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGCGGCGAGGTTACGCGCTTGAGGCTTTTGGGGGACCAGGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATTGCAGACAGTGCCATTGTTGCACTTAACTGTAGCGGCATGCTCTTGGGAACTCAGCCTATCAGGGTAAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCAGTATTGCGTTAA 894 0.4306 MATVVADISADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDQTRQGYNLLTPNNFLVNTKPSANDNNQNNRRRRNNSAQGRRRFSGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRICGDPHSVLRFAFVEFSDEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFESACGEVTRLRLLGDQVHSTRIAFVEFAIADSAIVALNCSGMLLGTQPIRVSPSKTPVRPRVTRPVLR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02556 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 187 IPR000504 GO:0003723
Trre12g02556 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Trre12g02556 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 278 IPR000504 GO:0003723
Trre12g02556 297 CDD RRM2_CID8_like 205 286 IPR034825 -
Trre12g02556 297 SUPERFAMILY RNA-binding domain, RBD 199 290 IPR035979 GO:0003676
Trre12g02556 297 MobiDBLite consensus disorder prediction 65 105 - -
Trre12g02556 297 SMART rrm1_1 113 183 IPR000504 GO:0003723
Trre12g02556 297 SMART rrm1_1 210 281 IPR000504 GO:0003723
Trre12g02556 297 FunFam Polyadenylate-binding protein-interacting protein 10 203 281 - -
Trre12g02556 297 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 33 290 - -
Trre12g02556 297 FunFam Polyadenylate-binding protein-interacting protein 11 76 189 - -
Trre12g02556 297 SUPERFAMILY RNA-binding domain, RBD 76 188 IPR035979 GO:0003676
Trre12g02556 297 CDD RRM1_CID8_like 110 189 IPR034823 -
Trre12g02556 297 Pfam Ataxin-2 C-terminal region 33 48 IPR009818 -
Trre12g02556 297 MobiDBLite consensus disorder prediction 65 87 - -
Trre12g02556 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 285 IPR000504 GO:0003723
Trre12g02556 297 Gene3D - 70 188 IPR012677 -
Trre12g02556 297 Gene3D - 197 290 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02556 Trre-Chr12 30086051 30090796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02556 109 266 Eukaryotic Initiation Factors Gene Family AT1G34140 25.466 1.97e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02556 - - gmx:100779109 486.108