Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02531 ATGAGAGGTGGAAATAGTTCAATTTCTTTTGAGAAATTAAAGCTTCTAATCGTCGTCGTAGCTCATCTCATCGACGCTGTAGCTTTTCTTCATCGCAGTGGTATTGTGTTCAATTTGACTTCAATTTATCCGGGGTTCAATTTGGCTTCAAAAATTGGATTCAAAAGATGTTCGTGCCATTGGCATTTGGGGGATGATTTTAGAAAAACATTGAAGGAAGTTAATTATGATTCGAAGGATGGTAAAAGGGTTAGTAAAGAGATTGGTGAGAAGTGGTGGTCCATGACTGATGCAGAGAAAAAGCCTTATTTGGATAGAGTTATTGAACTGAAGGCAGAATATGAGAAGGCTATGGAAATCTATAATGCTACTAAAAAGGAAGATCAACAAGAGGGTTATGACAAGTCTAATAAGGAAGCCACTGCAGTACCGACGAGGCAAGAAATAGTAACTTTACAAGGTTCAGAGCTGCTTCCTTATTTTTTCAGAATATTGATCTATATGTTCTCTCTTCCCATTTTGTAA 525 0.3714 MRGGNSSISFEKLKLLIVVVAHLIDAVAFLHRSGIVFNLTSIYPGFNLASKIGFKRCSCHWHLGDDFRKTLKEVNYDSKDGKRVSKEIGEKWWSMTDAEKKPYLDRVIELKAEYEKAMEIYNATKKEDQQEGYDKSNKEATAVPTRQEIVTLQGSELLPYFFRILIYMFSLPIL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02531 174 Pfam HMG (high mobility group) box 66 122 IPR009071 -
Trre12g02531 174 SUPERFAMILY HMG-box 70 134 IPR036910 -
Trre12g02531 174 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 66 122 IPR009071 -
Trre12g02531 174 Coils Coil 107 131 - -
Trre12g02531 174 Gene3D High mobility group box domain 63 145 IPR036910 -
Trre12g02531 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 65 140 IPR031061 -
Trre12g02531 174 SMART hmgende2 62 123 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02531 Trre-Chr12 29479844 29484514 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre12g02531 HMG_box 7.4e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02531 K25507 - gmx:100810345 105.916