Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02524 ATGATGCCATCATCATCAGCCTCTCAAGTCATAACTTGCAAAGCTGCAGTGGCATGGGGAGCTGGGGAGGCATTGGTAATGGAAGAAGTGGAAGTCAGTCCTCCCCAACCATTGGAGATTAGAATTAAGGTTGTCTCCACAGCTATTTGTTGTAGTGATCTTGCTGCTTGGAAACATCATACCATATTTCCTCGCATATTTGGCCATGAAGCTTCTGGGGTTGTTGAGAGTGTAGGGCAAGGAGTGACAGAATTCAAAGAAGGGGACCATGTGTTAACAGTTTTCATTGGAGAATGCATGTCATGTAAGATGTGCAAATCAGGAAAGAGTAGTATTTGTCAAGTTTTGGGATTCGAAAGAAAGGGTTTAATGCATAGCGATCAAAAGACGCGATTCATGGTAAAAGGGAAGCCTGTTTATCATTATTGTGCAGTTTCAAGTTTTAGTGAATATACAGTTGTCCATTCTGGATGTGCCGTAAAAATCAGTCCTCATGTACCACTTGAGAAAGTATGCCTTCTCAGCTGTGGTGTTGCTGCAGGTATAGGTGCAGCATGGAATGTTGCTGATGTATCAAAAGGATCAACAGTTGTTATATTTGGTCTTGGAACTGTTGGCCTTTCTGTTGCTCAAGGTGCCAAACTAAGGGGTGCATCTAGAATAATAGGCGTTGACAATAATCCAAGGAAGTGCGAAAATGCTAAAGTTTTTGGGATTACAGAAGTCGTTTATCCGAATTCGTGCAAAGAACCCATCTCGCAGGTTATAAAGGGCATTACTGATGGTGGAGCAGATTTCTGTTTTGAATGTGTAGGTGACAGTGATATGTTAACCACTGCATTAGAGTCATGTTGTGATGGATGGGGTGTGACTGTAGCACTTGGGGTGCCAAGGCTGAAGCCTAAGATCTCAGCTCATTATTCTCTATTCCTTAGAGGAAGAACTTTAAAAGGATCTATATTTGGAGGATGGAAACTTAAATCCGATCTTCCTTCATTGGTAGAGAAGTATATGAACAAGGAAATCCAGATTGATGATTACATAACACACAATTTGCCATTTGATGACATTAACAAAGCTTTCAATCTCATGACAGAAGGAAAGTGTCTTCGTTGTGTTATCCACATGCCAAGATAA 1137 0.4116 MMPSSSASQVITCKAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTAICCSDLAAWKHHTIFPRIFGHEASGVVESVGQGVTEFKEGDHVLTVFIGECMSCKMCKSGKSSICQVLGFERKGLMHSDQKTRFMVKGKPVYHYCAVSSFSEYTVVHSGCAVKISPHVPLEKVCLLSCGVAAGIGAAWNVADVSKGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPRKCENAKVFGITEVVYPNSCKEPISQVIKGITDGGADFCFECVGDSDMLTTALESCCDGWGVTVALGVPRLKPKISAHYSLFLRGRTLKGSIFGGWKLKSDLPSLVEKYMNKEIQIDDYITHNLPFDDINKAFNLMTEGKCLRCVIHMPR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02524 378 FunFam S-(hydroxymethyl)glutathione dehydrogenase 181 319 - -
Trre12g02524 378 Gene3D - 16 371 - -
Trre12g02524 378 Gene3D - 181 319 - -
Trre12g02524 378 Pfam Zinc-binding dehydrogenase 205 329 IPR013149 -
Trre12g02524 378 SUPERFAMILY GroES-like 327 375 IPR011032 -
Trre12g02524 378 FunFam Alcohol dehydrogenase 6 16 196 - -
Trre12g02524 378 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Trre12g02524 378 PANTHER ALCOHOL DEHYDROGENASE 9 374 - -
Trre12g02524 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 340 IPR036291 -
Trre12g02524 378 SUPERFAMILY GroES-like 7 185 IPR011032 -
Trre12g02524 378 Pfam Alcohol dehydrogenase GroES-like domain 39 161 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02524 Trre-Chr12 29419800 29425067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02524 10 118 Monolignol Biosynthesis Gene Families AT2G21730 33.621 3.65e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02524 K00001 - gmx:100819938 654.825