Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02523 ATGGCATCATCAGCCCCTCAAGTCATAACCTGCAAAGCTGCAGTGGCACGGGGAGCTGGAAAGGAATTGGTAATGGAGGAAGTGGAAGTCAGTCCTCCCCAACCATTGGAGATTAGAATTAAGGTTGTCTCCACCTCTATCTGTTCTAGGGATCTTAATGCTCGCAAATATCAAGCCATATTTCCTCGCATATTAGGCCATGAAGCATCTGGAATTATTGAGAGTGTAGGGCAAGGAGTGACTGAATTCAAAGAAGGGGACCATGTGTTAACAGTTTTCATGGGAGAATGCATGTCATGCAGGACGTGCAAATCAGGAAAGTGTAGTATTTGTCAAGTTTTGGGATTGGAAAAAAAGGGTTTAATGCATAGCGATCAAAAGACGCGATTCGCGGTAAAAGGGAAACCTGTTTATCATTTTTGTGCAGTTTCAAGTTTTAGTGAATATACAGTAGTCCATTCTGGATGTGCAGTAAAAATCAGTCCTCATGTACCTCTCGAGAAAGTATGTCTTCTTAGCTGTGGTGTTGCTGCAGGTTTGGGCGCGGCATGGAATGTTGCTGATGTGTCAAAGGGATCAACGGTGGTTATATTTGGTCTTGGAACGGTTGGCCTTTCTGTTGCTCAAGGCGTCAAACTAAGGGGTGCGTCTAGAATAATTGGTGTTGACAAAAATCCACGAAAGTGTATAAATGCTAAAGCTTTTGGGATTACTGAAATCGTTGATCCGAATTTGTACAAAGAACGACCTATCGCGCAGGTTATAAGGAACATTACTGATGGTGGAGCAGATTTCTGTTTTGATTGTGTAGGTGACACTGATATGATAACCACTGCATTGGAGTCATGTTGTGATGGATGGGGTATGACAGTAGCACTTGGTGTGCCAAAGGCTAAGCCTAAGATCTCAGCTCATTATTCTCTATTCCTAAGAGGAAGAACATTAAAAGGATCTATATTTGGAGGATGGAAACCTAAATCAGATATTCCTTCATTAGTAGAGAAATATATGAATAAGGTAAAGTAA 1026 0.4172 MASSAPQVITCKAAVARGAGKELVMEEVEVSPPQPLEIRIKVVSTSICSRDLNARKYQAIFPRILGHEASGIIESVGQGVTEFKEGDHVLTVFMGECMSCRTCKSGKCSICQVLGLEKKGLMHSDQKTRFAVKGKPVYHFCAVSSFSEYTVVHSGCAVKISPHVPLEKVCLLSCGVAAGLGAAWNVADVSKGSTVVIFGLGTVGLSVAQGVKLRGASRIIGVDKNPRKCINAKAFGITEIVDPNLYKERPIAQVIRNITDGGADFCFDCVGDTDMITTALESCCDGWGMTVALGVPKAKPKISAHYSLFLRGRTLKGSIFGGWKPKSDIPSLVEKYMNKVK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02523 341 PANTHER ALCOHOL DEHYDROGENASE 7 339 - -
Trre12g02523 341 SUPERFAMILY GroES-like 5 184 IPR011032 -
Trre12g02523 341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 338 IPR036291 -
Trre12g02523 341 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Trre12g02523 341 FunFam alcohol dehydrogenase 1-like isoform X1 19 178 - -
Trre12g02523 341 Pfam Alcohol dehydrogenase GroES-like domain 37 159 IPR013154 -
Trre12g02523 341 Gene3D - 14 339 - -
Trre12g02523 341 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 318 - -
Trre12g02523 341 Pfam Zinc-binding dehydrogenase 203 328 IPR013149 -
Trre12g02523 341 Gene3D - 179 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02523 Trre-Chr12 29415574 29419060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02523 37 174 Monolignol Biosynthesis Gene Families AT4G37980 26.761 1.62e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02523 K00001 - gmx:100819938 576.63