Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02499 ATGACCGAAAAAGACAAACTCGGAGCCTCCGCCGGCCACCCTCCTCCGCCGCAATCTCAACCCTTTCCACCTCCTCAGTACGGTACTTTCCAAGGTGTCTCCAACTTCCCTCCTCCTCTTCCTCCTCACACCAACCAATACCCTGCCATCGGTTTCCCTCAACCCGTCCCCCCTCCCGGCTCCGACCCCTCCGCCCCTCCTCCTCCCTATTACCCTCATGGCTACCAAGCTTTTCCCGATTCAGGTTATGCAGTTGCTGAAGGAAGACCTGTGAGAGAAAGGCGACTTGGGTGTTGTGGTATTGGTTGTGGTTGGTGCCTGTTTGTAATGGGTTTCTTTCTCGCTGCTATTCCATGGTATGTTGGGGCAATAATTGTTCTTTTTTCCAGAGTAGACTACCGAGAGAAACCTGGATACATTGCTTGTTTGATTGCTGCTATTGTGGCTACAATCGCGATTGTTCTTGGCGCAACAAATGTAGCAGATGACTGGTAA 495 0.5172 MTEKDKLGASAGHPPPPQSQPFPPPQYGTFQGVSNFPPPLPPHTNQYPAIGFPQPVPPPGSDPSAPPPPYYPHGYQAFPDSGYAVAEGRPVRERRLGCCGIGCGWCLFVMGFFLAAIPWYVGAIIVLFSRVDYREKPGYIACLIAAIVATIAIVLGATNVADDW 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02499 164 PANTHER 60S RIBOSOMAL PROTEIN L18A-LIKE 20 164 IPR044804 -
Trre12g02499 164 MobiDBLite consensus disorder prediction 1 71 - -
Trre12g02499 164 MobiDBLite consensus disorder prediction 35 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02499 Trre-Chr12 29127553 29131197 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02499 27 164 Cytoplasmic Ribosomal Protein Gene Family AT1G29970 36.364 6.85e-25 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02499 - - gmx:100810998 181.8