Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02488 ATGGAATGGATTTCAAGCATAATTCTTATCCTTGTGACACTTTGTTCAATATGGTCATGGAAGGTGTTAAATTGGTTGTGGTTAAGGCCTAAGAAGCTAGAGAAGTTGTTAAGAGAACAAGGGCTTCAAGGGAATCCTTATAAGATTTTGCTTGGGGACACAAAGGATCTTTTTAAGATGGAAAAAGAAGCAAGATCCAAACCCATGAATCTCTCGGATGATATAGCGCCACGTGTCATTCCTTACACCCAACAGAGTGTTAAAATTCATGGGAAGAATTCTTTTGTTTGGTTTGGAATAAAACCAAGGGTGACTCTCACAGAACCTGAGCAAATAAAACATGTATTGAACAACATATCTGAATTTCCAAAGACCAATTATAAGATTTTCAAGTTACTAGCTAGTGGTGTTGCTAGTCATGAGGGAGAAAAATGGAGCAAGCATAGAAGGCTAATCAACCCTGCTTTTCATTTAGAAAAATTGAAGATTATGACACCAGCTTTCTTCACAAGTTGCAATGATTTGATTAGCAATTGGGAGGGAATGTTGTCTTCAGATGGATCATGTGAAATTGATATATGGCCATCTCTTCAGAATCTAGCCAGTGATGCTATTTCTCGAACTGCATTTGGAAGTAGTTATGAAGAAGGAAAAAGAATATTTCAACTTCAAAGAGAACAAGCTGAACTTATAACCAAAGCTGTAATGAAGTCTGTCATCCCTTTATGGATGTTTTTACCTACTGTTGTCCATAAGAGGATGAATGAAGTCAACAATGATATAAAGTCTTCGCTCAAAGATATTATTAACAAGAGGGAGAAAGCATTAAAGGAAGGGGAATCAACTAAGAATGACTTATTGAGTATTCTTCTTGAGTCAAATCAAAAGGAAATTGAAGAAAATGAAAGCAACAAGAATGTGGGAATGAGTATTGAAGATGTAATAGAGGAATGCAAGTTGTTCTACTTTGCAGGACAAGAAACTACTTCAGTTTTGCTTGTTTGGACAATGATTTTGTTGAGTAGGTACCCCGATTGGCAAACGCGCGCAAGGGATGAAGTATTGAATTTGTTTGGCAGTAAAAAACCGGATTTCGATGGACTAAATAACCTAAAGATTGTCACCATGATTTTGTACGAGGTTCTTAGGTTATACCCGCCCGTAATTGGCCTAGCTCGAGATGTTCAGAACGATCTGAAACTTGGAAATTTGAAATTACCAGCCGGAGTAGAGGTTTTCTTACCAATTATTCTGCTTCACCACGACTGCGAACTATGGGGTGATGATGCTAAGATGTTCAATCCCGAGCGATTTTCCGGAGGAATTTCAAAAGCAACAAATGGTAGAGTTTCATTTTTTCCATTTGGATGGGGTCCTAGAATTTGTTTAGGGCAAAATTTTTCTCTATTGGAAGCAAAGATGGCAATGGCAATGATTTTGCAACATTTCTCATTTGAACTTTCACCAACATATGCTCATGCTCCAGCCACAACGATTACTCTTCGACCACAATATGGTGCTCATATTATTCTACGCAAAGTGGAAATATAA 1551 0.3752 MEWISSIILILVTLCSIWSWKVLNWLWLRPKKLEKLLREQGLQGNPYKILLGDTKDLFKMEKEARSKPMNLSDDIAPRVIPYTQQSVKIHGKNSFVWFGIKPRVTLTEPEQIKHVLNNISEFPKTNYKIFKLLASGVASHEGEKWSKHRRLINPAFHLEKLKIMTPAFFTSCNDLISNWEGMLSSDGSCEIDIWPSLQNLASDAISRTAFGSSYEEGKRIFQLQREQAELITKAVMKSVIPLWMFLPTVVHKRMNEVNNDIKSSLKDIINKREKALKEGESTKNDLLSILLESNQKEIEENESNKNVGMSIEDVIEECKLFYFAGQETTSVLLVWTMILLSRYPDWQTRARDEVLNLFGSKKPDFDGLNNLKIVTMILYEVLRLYPPVIGLARDVQNDLKLGNLKLPAGVEVFLPIILLHHDCELWGDDAKMFNPERFSGGISKATNGRVSFFPFGWGPRICLGQNFSLLEAKMAMAMILQHFSFELSPTYAHAPATTITLRPQYGAHIILRKVEI 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02488 516 CDD CYP72 80 510 - -
Trre12g02488 516 PRINTS E-class P450 group I signature 313 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02488 516 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02488 516 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02488 516 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02488 516 PRINTS E-class P450 group I signature 200 218 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02488 516 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02488 516 FunFam Cytochrome P450 734A1 27 515 - -
Trre12g02488 516 SUPERFAMILY Cytochrome P450 79 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02488 516 PRINTS P450 superfamily signature 462 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02488 516 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02488 516 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02488 516 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02488 516 Pfam Cytochrome P450 89 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02488 516 PANTHER CYTOCHROME P450 FAMILY MEMBER 17 507 - -
Trre12g02488 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Trre12g02488 516 Gene3D Cytochrome P450 79 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02488 Trre-Chr12 28810248 28814990 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02488 5 514 Cytochrome P450 AT3G14690 55.859 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02488 - K23809 gmx:100808323 767.689