Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02487 ATGATGGAAATAACTTCTACAACTACAACATGCTTTTTCATAGTGGTCCCTTTGGTTCTTCTATGGGGATGGAAGCTCCTGAGTTGGCTATGGCTAAGGCCAAAGAGACAAGAAAAGGTGCTGAGAGCACAAGGCCTTCAAGGAAATCCATACAAGGTTTTGGTTGGAGACACAAAGGAGATGATTAAGTTGATGATGGAAAATGCAAAATCTCCAATTTTCACTAATTCTCTCTCAGATGATAAAGATGTCACACCACATGTCTTCACATTTATTCATCATATTTTCCACAAATTTGGCAAGAATTCCTTTTTATGGGAAGGTCCAAATGCAAAAGTGATCATAACAAATCCTGACCAAATTAAGGAAATCTTCAACAACATGCATGACTTTGTGAAACCTAAGTTGAGTCCCCTTTTCAAGCTATTGGGTACAGGACTTGCAAATTATGAAGGCGAGAAATGGCGGATCCATCGAAAGATTATCAATCCCGCTTTCTACTCCGAAAAATTGAAGATTATGTCACCGATATTTTTCCAATGTTGTGATGAAATGATTAGCAAATGGGAAGAAATGTGTTCAGATGGAAAATTTGAAACTGATGCATGGCCTTTCGTTCAGACTTTGACGTGTGATGTCATTTCTAGAACAGCGTTTGGAAGCAATTATGAAGAAGGAAAAAGAATATTTGAACTTCTAAAAGAACAAGCTAAGCTAATTATGAAATTACGCAATTTTTACATTCCGGGATGGAGGTATCTACCAACAACTATACATAGGAGGATGACAAAAATTGATAAAGATATGCAAGCATCACTAATGGCTATAATCAACAAAAGAAAGAAAGCAATGATGGCTGGTGAAGTCCTAAACAATGACTTATTGGGCATACTTTTGGAATCAAATAAAAAAGAAATACAAGAAAATGGAAACCATAAGAATGTTGGTATGAGTGACCAAGAAGTACTTGAGGAATGCAATGCATTCTACCTTGGAGGACAAGAATCAACATCAGTTCTACTTGTTTGGACAATGATTTTGTTGAGTAGATATCCTCATTGGCAAGCAAGTGCTAGGAAGGAAGTCTTGCAAGTTTTTGGCAATCAAATGCCAAACATTGATGGGATAAGTCGCCTAAAAATAGTGACAATGATTCTCTACGAGGTACTAAGGTTATATCCACCAGTAATTTACTTCAACCGAGTAGCTCGCAAAGATGTAAAACTTGGAAATCTTTTCATACCAGCGGGAGCACATGTTTCCTTACCGATACTCTTGATTCATCACAATCGTGATATTTGGGGTGACGATGCTACCGAATTCAATCCAGAAAGATTTTCTGAAGGAATTGCAAAGGCAACAAAGGGACAAGTTACTTTTTTCCCATTTGGTTATGGTCCTAGAGTGTGCATTGGGCAAAACTTTGCTTTATTAGAAGCAAAGATTATTTTGTCACAACTTCTACAACGTTTCTCATTTGAACTTTCACCTAGCTATGTTCATGCTCCAACAACCGTGTTCACTCTTAATCCAAAACATGGGGCTCATATCATTTTCCACAAATTATAG 1569 0.3722 MMEITSTTTTCFFIVVPLVLLWGWKLLSWLWLRPKRQEKVLRAQGLQGNPYKVLVGDTKEMIKLMMENAKSPIFTNSLSDDKDVTPHVFTFIHHIFHKFGKNSFLWEGPNAKVIITNPDQIKEIFNNMHDFVKPKLSPLFKLLGTGLANYEGEKWRIHRKIINPAFYSEKLKIMSPIFFQCCDEMISKWEEMCSDGKFETDAWPFVQTLTCDVISRTAFGSNYEEGKRIFELLKEQAKLIMKLRNFYIPGWRYLPTTIHRRMTKIDKDMQASLMAIINKRKKAMMAGEVLNNDLLGILLESNKKEIQENGNHKNVGMSDQEVLEECNAFYLGGQESTSVLLVWTMILLSRYPHWQASARKEVLQVFGNQMPNIDGISRLKIVTMILYEVLRLYPPVIYFNRVARKDVKLGNLFIPAGAHVSLPILLIHHNRDIWGDDATEFNPERFSEGIAKATKGQVTFFPFGYGPRVCIGQNFALLEAKIILSQLLQRFSFELSPSYVHAPTTVFTLNPKHGAHIIFHKL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02487 522 Gene3D Cytochrome P450 34 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 FunFam Cytochrome P450 734A1 31 522 - -
Trre12g02487 522 PRINTS E-class P450 group I signature 460 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 PRINTS E-class P450 group I signature 341 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 PRINTS E-class P450 group I signature 209 227 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 PRINTS E-class P450 group I signature 96 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 PRINTS E-class P450 group I signature 470 493 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 PRINTS E-class P450 group I signature 321 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 463 472 IPR017972 GO:0005506|GO:0016705
Trre12g02487 522 PANTHER CYTOCHROME P450 FAMILY MEMBER 21 515 - -
Trre12g02487 522 PRINTS P450 superfamily signature 332 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 PRINTS P450 superfamily signature 461 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 PRINTS P450 superfamily signature 470 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 Pfam Cytochrome P450 73 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 SUPERFAMILY Cytochrome P450 84 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02487 522 CDD CYP72 89 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02487 Trre-Chr12 28802431 28806966 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02487 2 522 Cytochrome P450 AT3G14690 51.145 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02487 - K17873 gmx:100781923 764.992