Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02486 ATGGCTACAACAACTACACCAATAATTCTTTTCACTGTGATGATACTTGTATTTACATGGGCATGGAGGATTTTGAATTGGGTATGGTTTAAGCCAAAGAAGCTAGAAAAATTACTAAGAGAACAAGGACTTAAAGGGAATCCATATAGACTTTTAGTAGGTGACATAAAAGATCTTCTTAAGATGCGAAAGGATGCTACTTCTAAACCCATGAATCTTTCTGATGATATTGTTCCTCGTGTGTATACCTATATCCAACAAAGTGCTATAAAATATGGAAAGAATTCTTTTATATGGTTTGGACCAACACCAAGGGTTAATATCACAGATCCTGAACTAATTAAAGATGTACTTAACAAATACTACGACTTCCGAAAGCCTAATGTGAATCCGCTTATCAAGTTACTAGTTAATGGTCTTGTAAATCTCGAGGGAGAGCAGTGGAGCAAGCACAGAAAGATAATAAATCCTGCATTCCATTTAGAAAAATTGAAGATCATGTTACCGATATTCTTCAAAAGTTGCGATGATCTGATTAGCAAATGGGAGACAATGTTGTCATCAGATGGATCATGTGAAATGGACGTGTGGCCTTTCCTTCAAAACTTGGCAAGTGATGTTATTTCTCGAACAGCATTTGGAAGTAGTTATGAAGAAGGACGGAGAATATTTCAACTTCAAATCGAGCAAGCTGAACTTGCAAAAACAGTTATGATGAAAGTTTACATCCCTGGATTTAGGTTTCTACCCACTCCTACCCATAGGAGGATGAAGGAAATTGCCAGAGATGTTAAAGATTCGCTTACCGATATGATTCACAAGAGAGAGATGGCTTTAAAGGCCGGTGAAGCAACTAAGGACGATTTATTAGGAATACTTTTGGAATCAAATCACAAGGAAATGAAAGAAAACGACAACAATAAGAATGTCGGAATGAATCTTGAAGATGTAATAGAGGAATGCAAGCTATTCTACTTTGCAGGACAAGAGACTACTTCAGTTTTGCTTGTTTGGACAATGGTGTTGTTGAGTAGGTACCCTGATTGGCAAGCGCGTGCAAGGGAGGAAGTATTACAAGTCTTCGGCAACAAAAAACCAGATTTTGATGGCCTAAGTCATCTTAAGATTGTTACCATGATTTTGTATGAGGTTCTTAGGTTATACCCACCAGTAATCGCGCTAGCTCGAACTGCTCACAAAGATTTGAAACTTGGAAACCTAACATTACCGGCCGGAGTACAACTATTCTTATCAATCATTTTGGTTCACCATGACATAGAACTATGGGGTGACGATGCTACGGTGTTCAACCCTGAGAGGTTTTCAGAAGGTGTTTTAAAAGCAACAAATGGAAAAAATGCATTTTTTCCATTTGGTGGGGGTCCTAGAGTTTGCATTGGACAAAACTTTTCCATATTGGAAGCAAAGATAGCAATGGCAATGATATTACAACATTTTTCATTTGAACTTTCTCCAACCTATGCTCATGCCCCGGCTACAGTGATTACGCTTCAACCGCAATATGGTGCTCATATAATTCTACGAAAATTGTAA 1554 0.379 MATTTTPIILFTVMILVFTWAWRILNWVWFKPKKLEKLLREQGLKGNPYRLLVGDIKDLLKMRKDATSKPMNLSDDIVPRVYTYIQQSAIKYGKNSFIWFGPTPRVNITDPELIKDVLNKYYDFRKPNVNPLIKLLVNGLVNLEGEQWSKHRKIINPAFHLEKLKIMLPIFFKSCDDLISKWETMLSSDGSCEMDVWPFLQNLASDVISRTAFGSSYEEGRRIFQLQIEQAELAKTVMMKVYIPGFRFLPTPTHRRMKEIARDVKDSLTDMIHKREMALKAGEATKDDLLGILLESNHKEMKENDNNKNVGMNLEDVIEECKLFYFAGQETTSVLLVWTMVLLSRYPDWQARAREEVLQVFGNKKPDFDGLSHLKIVTMILYEVLRLYPPVIALARTAHKDLKLGNLTLPAGVQLFLSIILVHHDIELWGDDATVFNPERFSEGVLKATNGKNAFFPFGGGPRVCIGQNFSILEAKIAMAMILQHFSFELSPTYAHAPATVITLQPQYGAHIILRKL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02486 517 SUPERFAMILY Cytochrome P450 79 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02486 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Trre12g02486 517 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02486 517 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02486 517 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02486 517 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02486 517 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02486 517 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02486 517 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02486 517 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02486 517 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02486 517 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02486 517 CDD CYP72 84 513 - -
Trre12g02486 517 Gene3D Cytochrome P450 28 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02486 517 FunFam Cytochrome P450 734A1 29 517 - -
Trre12g02486 517 Pfam Cytochrome P450 82 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02486 517 PANTHER CYTOCHROME P450 FAMILY MEMBER 20 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02486 Trre-Chr12 28796985 28800342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02486 1 517 Cytochrome P450 AT3G14690 58.108 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02486 - K23809 gmx:100777623 825.083