Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02475 ATGGAAGCATTATGTGCAATTTCAGCATGCATAATTCTTTTAGTAACGCTTGTTTGGGCATGGAAAATGTTGATATGGTCATGGCTAAGACCCAAGAAGCTAGAAAAGTTGTTAAGAGAACAAGGCCTTAAAGGGAACCCATATAAGCTTTTAGTTGGAGACATGAAGGAGTTTTTGAAGATGCAAAAGGAAGCAAGATCCAAACCCATGCCTGTATCTGATGATATAGTCCCTCGTGTGTTTCCCTTCAGTTACCAAACTGTTGCTAAACATGGAAAAAATTCTTTTATGTGGTTTGGACCAACACCAAGGGTGATTCTAACAGATCCTGAGTTAGTTAAAGAAGTTTTCAATAAGATCTATGACTTCCAAAAGCCTAATACAAATCCTCTTGTCAGAATACTAGCTACCGGTCTTATAATCCACGAGGGAGAAAAGTGGAATAAGCATAGAAAGATAATTAATCCTGCATTCCATTTAGAAAAATTGAAGATGATGTTACCAATATTCTTCAAAAGTTGCAATGATCTAATTAGCAAATGGGAGGGAATGTTATCTTCAGATGGATCATGTGAAATTGATGTATGGCCTTCCATTAAAAATTTGGCCAGTGATGTTATTGCTCGAACAGCTTTTGGAAGTAGTTATGAAGAAGGAGTGAAAATATTTCAACTTCAAAAGGAGCAAGCTGAACTTACAATGGAAGTTTTGATGAAAATTTATATCCCTGGTTTGAGATTTCTACCAACTACTACAAACAAAAGGTTGAAGGAAATTGACAGAGATATAATAGCTTCCTTGAGTGATATGATTAACAAGAGAGAAAGAGAAATAAAGGCAGGTGAAGCAACTAAGAATGACTTATTAGGCATTCTTCTTGAATCAAATCACAAGGAAATTGAAGAAAACAACAACAATAAAAATGTTGGTATGAATCTTGATGATGTAATCAAGGAATGCAAGCTTTTCTACCTTGCAGGGGAAGAAACAACTTCAGTTTTGCTTGTTTGGACAATTGTTTTATTGAGTAGGTACCCTAATTGGCAAGCGCGTGCAAGGGAGGAAGTTCGAGAAGTTTTTGGAAACAAAAATCCTGATTTTGAAGGACTAAGTCATCTTAAAATTGTGACCATGATTTTGTATGAGGTTCTAAGGTTATATCCACCAGTAGTTGTGCTTCCTCGAGCTATTTACAAAGATGTTAAAATTGGAAACCTAACATTACCAGCTGGAGTACAAATTGCCTTACCAATAGCTTGGCTTCACCATGACTCTGAATTATGGGGTGATGATTCTAAAGTGTTCAATCCTGAGAGATTTTCTAGAGGAATTTCCAAAGCATCATCAAATGGTAGAATTTCATATTTTCCATTTGGTTGGGGTCCTAGAAGCTGCATTGGACAAAACTTTTCCATGTTGGAAGCAAAGATGGCAATAGTATTAATTTTGCAACATTTCTCATTTGAACTTTCTCCAACTTATGCTCATGCTCCAGCTTCAGTAATTACTCTTCAACCACAATATGGTGCTAATATCATTCTGCATAAAGTGGAAATATAA 1560 0.359 MEALCAISACIILLVTLVWAWKMLIWSWLRPKKLEKLLREQGLKGNPYKLLVGDMKEFLKMQKEARSKPMPVSDDIVPRVFPFSYQTVAKHGKNSFMWFGPTPRVILTDPELVKEVFNKIYDFQKPNTNPLVRILATGLIIHEGEKWNKHRKIINPAFHLEKLKMMLPIFFKSCNDLISKWEGMLSSDGSCEIDVWPSIKNLASDVIARTAFGSSYEEGVKIFQLQKEQAELTMEVLMKIYIPGLRFLPTTTNKRLKEIDRDIIASLSDMINKREREIKAGEATKNDLLGILLESNHKEIEENNNNKNVGMNLDDVIKECKLFYLAGEETTSVLLVWTIVLLSRYPNWQARAREEVREVFGNKNPDFEGLSHLKIVTMILYEVLRLYPPVVVLPRAIYKDVKIGNLTLPAGVQIALPIAWLHHDSELWGDDSKVFNPERFSRGISKASSNGRISYFPFGWGPRSCIGQNFSMLEAKMAIVLILQHFSFELSPTYAHAPASVITLQPQYGANIILHKVEI 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02475 519 Pfam Cytochrome P450 89 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02475 519 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Trre12g02475 519 CDD CYP72 81 513 - -
Trre12g02475 519 Gene3D Cytochrome P450 28 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02475 519 SUPERFAMILY Cytochrome P450 79 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02475 519 PANTHER CYTOCHROME P450 FAMILY MEMBER 17 510 - -
Trre12g02475 519 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02475 519 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02475 519 PRINTS P450 superfamily signature 378 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02475 519 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02475 519 FunFam Cytochrome P450 734A1 28 518 - -
Trre12g02475 519 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02475 519 PRINTS E-class P450 group I signature 202 220 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02475 519 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02475 519 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02475 519 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g02475 519 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02475 Trre-Chr12 28651412 28656023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02475 3 517 Cytochrome P450 AT3G14690 55.814 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02475 - - gmx:100777623 759.985