Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02472 ATGGATGGTATTAATTATGTCTCATGTCCTAACTGCAAAAAAAGTGCTTCTGCTGCAGAAACACACATCAAGTGTGAATTCTGTCATGAAAGTGTGGATTACCCCATTACAAGGTATCACTTGGAGCTTGGTGTCAAGGACTCTACAGGTTCGACTATATTTGTATTGTTTGATGAGGTTGCTGAGCAAGTGGCACAAATGAAATTAGTTGATCTGGCCGCAACTTTAGAGAATGAAACTGAGAATGGTTCATCAATACCACATCAACTGAAAAGGATCATTGGGACTATACATATATTCCAAATTAAGATGAAATCTTACTTTGAGGGTCGTGGAAGACAAAGTTTCACAGTGAGTAGGGTTGTGAAGCCTAAGGTAAGGTTGTTCTCGATAAATTGA 399 0.386 MDGINYVSCPNCKKSASAAETHIKCEFCHESVDYPITRYHLELGVKDSTGSTIFVLFDEVAEQVAQMKLVDLAATLENETENGSSIPHQLKRIIGTIHIFQIKMKSYFEGRGRQSFTVSRVVKPKVRLFSIN 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02472 132 CDD RPA1_DBD_C 6 123 IPR047192 -
Trre12g02472 132 Gene3D - 1 128 IPR012340 -
Trre12g02472 132 SUPERFAMILY Nucleic acid-binding proteins 4 125 IPR012340 -
Trre12g02472 132 Pfam Replication factor-A C terminal domain 3 122 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02472 Trre-Chr12 28558134 28558777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02472 6 124 Core DNA Replication Machinery Family AT5G08020 29.752 8.46e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02472 - - tpra:123895820 196.823