LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g02470	ATGAGTTTTATGAATCACATAAGAACCGTTGCCAAAGAAGCATTAGACCGCACATCAATAATCGCGAAATTCCTATGTTGTCTTCACTTCACAAGCAACTATCTCTGTTCTCCAACACACGCGTATGGTCCTAGTATGCTCCCTACCCTAAATATTGCTGGAGATGTTGTTCTTGTTGAACATCTTTCTCCGAGGATTGGGAAAGTTGGTTATGGTGATTTGGTTCTTGTTAGGTCACCTTTGAACCCTAATCGGAACTTGACAAAACGTATTGTTGCTATGGAAGGGGATACTGTTACTTATTTTGATCCTTTGAATTCTGATTCTTCTAGAAATGCTGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGAGATAACATCTATGCTTCTCGTGATTCACGTCATTTTGGTCCCGTTCCATATGGTCTTATAAAAGGAAAAGTGTTTTTCCGGGTTTGGCCACCCAGTAGCTTTGGACTGCTAGATAATTGA	492	0.4085	MSFMNHIRTVAKEALDRTSIIAKFLCCLHFTSNYLCSPTHAYGPSMLPTLNIAGDVVLVEHLSPRIGKVGYGDLVLVRSPLNPNRNLTKRIVAMEGDTVTYFDPLNSDSSRNAVVPKGHVWIQGDNIYASRDSRHFGPVPYGLIKGKVFFRVWPPSSFGLLDN	163

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g02470	163	CDD	S26_SPase_I	43	148	IPR019533	GO:0004252\|GO:0006465
	Trre12g02470	163	Pfam	Signal peptidase, peptidase S26	111	153	IPR019533	GO:0004252\|GO:0006465
	Trre12g02470	163	Pfam	Signal peptidase, peptidase S26	21	101	IPR019533	GO:0004252\|GO:0006465
	Trre12g02470	163	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	115	134	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Trre12g02470	163	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	34	50	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Trre12g02470	163	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	87	99	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Trre12g02470	163	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	4	162	-	-
	Trre12g02470	163	FunFam	Inner membrane protease subunit 1	32	160	-	-
	Trre12g02470	163	SUPERFAMILY	LexA/Signal peptidase	34	161	IPR036286	-
	Trre12g02470	163	Gene3D	Umud Fragment, subunit A	32	159	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g02470	Trre-Chr12	28535062	28539125	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g02470	46	161	MADS-box Gene Family	AT1G29960	52.137	9.02e-39	126

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g02470	K09647		-	cave:132173278	259.61