Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02460 ATGAGGAAATCCGTAGTTATCGCCTTTTCGATAACTATATGCTTCATTGCCTTTGTGATATCCAAGATTATAATCTCAATTCTTCTCTACAAAAGATGGAGAAAAAAACATTTGATTTATGAAGAAGGTTATACAGGAGGGAAGATGGTGATATTTAGGTCTTCAATCCTTAAATCATTAACAACTGATATGGTGTTAAAGAAGACACAGAAACTGAACAATAAGGACATCATTGGTTCCGGTGGTTATGGTGTAGTTTACGAACTAAAACTGAACGACTCTGCAGCCTTTGCTGTGAAAAGACTGAACCGCGGAACTGCAGAAAGAGATAAAGGTTTTGAGAGAGAGTTACAAGCAATGGCAGATATAAAACATCGCAATGTTGTGACTCTTCATGGATATTACACTGCACCACACTACAATCTTCTCATTTATGAGTTGATGCCTAATGGAAGTTTGGATTCCCTTTTGCATGGGAGATCAATGAACAAGAAGGTTTTGGACTGGCCAACAAGACACAGAATAGCTATAGGTGCAGCAAGAGGAATATCATACCTTCACCATAACTGTATCCCTCACATTATCCACAGAGACATCAAGTCAAGTAATATATTGCTGGATCAGAATATGGAAGCTCGAGTTTCGGATTTCGGATTAGCCACATTGATGGAACCAAACAAAACTCATGTTTCCACAATTGTTGCCGGGACTTTTGGATACTTGGCTCCGGAATATTTTGATACAGGAAGAGCAACGGTGAAAGGGGATGTTTATAGTTTTGGAGTTGTGTTACTTGAGCTTTTAACAGGAAAGAAACCAAGTGATGAAACATTTATGGAAGAGGGAACCAAACTTGTCACATGGGTGAAAACTGTAGTTCAAGAGAAGAAAGAGGAATTAGTTCTTGATAGTAGTTTAGGGCCATGTTGTCCAATGCATGAGGTCAACAAGGTGTTCAACATTGCAATGATGTGTCTTGAACCAGACCCTTTGAATAGACCAACCATGGCCGAGGTCGTCAACTTGCTCGATAAAACACAAACAGATAGACTTGCTACAGAATCCTGA 1068 0.3923 MRKSVVIAFSITICFIAFVISKIIISILLYKRWRKKHLIYEEGYTGGKMVIFRSSILKSLTTDMVLKKTQKLNNKDIIGSGGYGVVYELKLNDSAAFAVKRLNRGTAERDKGFERELQAMADIKHRNVVTLHGYYTAPHYNLLIYELMPNGSLDSLLHGRSMNKKVLDWPTRHRIAIGAARGISYLHHNCIPHIIHRDIKSSNILLDQNMEARVSDFGLATLMEPNKTHVSTIVAGTFGYLAPEYFDTGRATVKGDVYSFGVVLLELLTGKKPSDETFMEEGTKLVTWVKTVVQEKKEELVLDSSLGPCCPMHEVNKVFNIAMMCLEPDPLNRPTMAEVVNLLDKTQTDRLATES 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02460 355 Gene3D Phosphorylase Kinase; domain 1 48 147 - -
Trre12g02460 355 ProSiteProfiles Protein kinase domain profile. 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02460 355 SUPERFAMILY Protein kinase-like (PK-like) 61 341 IPR011009 -
Trre12g02460 355 SMART serkin_6 72 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02460 355 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 148 355 - -
Trre12g02460 355 FunFam Receptor-like serine/threonine-protein kinase 43 147 - -
Trre12g02460 355 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 8 347 - -
Trre12g02460 355 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Trre12g02460 355 Pfam Protein kinase domain 74 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02460 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Trre12g02460 355 Gene3D Transferase(Phosphotransferase) domain 1 148 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02460 Trre-Chr12 28347399 28349879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02460 3 344 Receptor kinase-like Gene Family AT2G35620 45.690 7.93e-97 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Trre12g02460 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02460 - - ahf:112703495 572.007