Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02454 ATGGCGGGAGAAGAAGAAAAAGAACGGCACAAAAACAATGGCGCCGAAACGGTGTCGTTTGAGGGTTCGGTTAAAGAAAAACAACCTCTGGAAGAAACGGCGTCGTTTCAACTTGATACCGCTGTGACAAGTAAGCCTGTTATTCTTTATTACAGAAAGAAAAAGAAAACCGGAAGAGAGAGTAATAATTCACAGAACAATCAAGTGTTGTTAAAGAAGGAAGAAGAAACGGTTGTTAAAGCTGATGATGACGTGGCAGATTCTTCTCTTCAAGTTGCCGCCGCCGCCGCCGCTTCGGTTTCCGGCGGAAAGAGTAAAACGACGGCGGAAGGTGCTTCAAGAAAGAGTACTGTGGTGGCCATGGAAGCAGCGAAGTTGAAGTTGAAGAACAAAGCTGGTACTGGTAGTTGTAGAAAAAGGAAAGAGATTGATGAGAATACTGAAAATGAAATGGATTTTCCTGATAATAAAGGCTATGCTTTAAGAAATGCTTCAAAAATCAAACATAAAATTACTACTCATGAGGTCGATCGAAAAATCGAAAAGAAAAATCATGCTAAGAAAAATCGCAATGAAGATGATCGGTTCACGTCCTTAATGTGCCATCAATGTCAGAGAAATGACAAGGGAAGGGTTGTTAGATGCAAGAGTTGCAAAAGGAAAAGATTTTGTGTATGCTGTATTAACAATTGGTATCCTCACTTGAAAGAGGATGATATTGCTGAGGCATGTCCTGTGTGTTGTGGCAATTGCAATTGCAAAACCTGTTTGCAATCAACTAAACTTATCAATGAAATAAAAAAAAAGGAGGATTCCAACAAAGATCAAGAAATTAAAAAAAAGGAGGTTGAGCTCTCCAAGTATATGCTAAAAATTCTTCTTCCGTATTTAATACGATTGGATCAAGAACAAACAGTCGAAAAGGAGATCGAAGCCAAGAGACAAGGGCTCCCACTCTCTGAGCTAAAAATCAAAGTAGCTGATTCATTTACTGATGAGCGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGACTACCACAGAAGCTGTACAGAATGCTCCTTTGACCTTTGTCTTCTCTGTTGCTGTGAGCTTCGTCGTGGGCAACTTCTAGGTGGTGCAGATCCATTTGATTTCGAGTTTATTTCCCGAGGGAGAAATTACCTGCATGGTGAAGATCCAAAGGAAATAATCAGAGAGAAAGTATCTCATGATGAGATTCGTGAATGGTCAAAATCTAGGTTGTATGCAGATAGTGAAGGTAACATTCCCTGTCCAAAAGCCAATAACGAATGTGATCATGGTTACCTTGAACTGAGAAGCATATTTCAGCCAAATCGGATCTCTGAGTTAGTATGTGAAGCAAAAGAACTTGCAGAAACAATTAAACTTCAAGAAGAAGAGGAGCCTTTTGATAATAGGTGCTCTTGTTTGAAGTCTGTTAGGAACACAGAAGATATACACATTAACACAAGGGAAGCAGCTTTTTGTGAAGATAGCAGTCGCAACATTTTGTACTGTCCTAGGGCTATAGATCTAAATCATGAAGGTTTAAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTCATTGTCAGCAATGTACTTGAATGTACTTCTGGTCTAAGCTGGGAGCCGCTTGTCATGTGGCGTGCATTTCGTCAGAGAAGGAAGTCCAAGAACAACTCACTTTATGATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGTAGATATTAATGTGCACCAATTCTTTACCGGGTACACAAATGGTCGCAAGGATTGGAAAGATTGGCCTCAGGTGTTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAAGAAAGTTTGCCTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTATAAAGAATACACAAATCCTTTCAATGGTGCTCTTAACCTTGCTGTGAAGTTGCCTGCTAATGTTCAAAAACCAGACATGGGACCAAAAACATATATTGCTTATGGATTTTCTCAGGAGCTTGGACGGGCTGATTCTGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTAAGGTGGAACTGGAACCTGCGACCATTGCTGAAATTAAGAAGTTGACACAAAAACACCTTGAGCAAGACAAGAGGGAGCTACATGGTCATAATAATCAGGATGGAGAAACAAATGTTGACGTGGCTGGTAATTTGTTCTCTTCCATAAATGCTTCAGATGGAGGGGATTCTTTAGATGGTGCTCTCTGGGATATATTTCGGAGAGAAGATGTACCTGTATTGGAGGAATATCTGAATAAGCATTTCAGAGAGTTCAGGCATGTTCATTGCTCTCCTTTAGTCGAGGTTATCCACCCTATACATGATCAGACCTTTTATCTAACCATTAAGCATAAGAAGAGGCTTAAAGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAACTAGGAGACGCTGTTTTCATTCCAGCTGGTTGTCCCCACCAAGTCAGAAATCTTAAGTCATGTACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTCAGTGCTTTCATTTGACTGAGGAGTTTCGCAAACTTCCAGTAAATCACAGGTCCGCAGAGGATAAACTGGAGGTGAAGAAAATGATTATATATGCTATGCTTGATGTAGTCACTAAGTTGGAGGAAACAAGGTCTAAGGAAACTGGAGTTCCATTGTAA 2742 0.4041 MAGEEEKERHKNNGAETVSFEGSVKEKQPLEETASFQLDTAVTSKPVILYYRKKKKTGRESNNSQNNQVLLKKEEETVVKADDDVADSSLQVAAAAAASVSGGKSKTTAEGASRKSTVVAMEAAKLKLKNKAGTGSCRKRKEIDENTENEMDFPDNKGYALRNASKIKHKITTHEVDRKIEKKNHAKKNRNEDDRFTSLMCHQCQRNDKGRVVRCKSCKRKRFCVCCINNWYPHLKEDDIAEACPVCCGNCNCKTCLQSTKLINEIKKKEDSNKDQEIKKKEVELSKYMLKILLPYLIRLDQEQTVEKEIEAKRQGLPLSELKIKVADSFTDERVYCDNCKTSIFDYHRSCTECSFDLCLLCCCELRRGQLLGGADPFDFEFISRGRNYLHGEDPKEIIREKVSHDEIREWSKSRLYADSEGNIPCPKANNECDHGYLELRSIFQPNRISELVCEAKELAETIKLQEEEEPFDNRCSCLKSVRNTEDIHINTREAAFCEDSSRNILYCPRAIDLNHEGLRHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQRRKSKNNSLYDVKAIDCLDWCEVDINVHQFFTGYTNGRKDWKDWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPYKEYTNPFNGALNLAVKLPANVQKPDMGPKTYIAYGFSQELGRADSVTKLHCDMSDAVNVLTHIAKVELEPATIAEIKKLTQKHLEQDKRELHGHNNQDGETNVDVAGNLFSSINASDGGDSLDGALWDIFRREDVPVLEEYLNKHFREFRHVHCSPLVEVIHPIHDQTFYLTIKHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGQCFHLTEEFRKLPVNHRSAEDKLEVKKMIIYAMLDVVTKLEETRSKETGVPL 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02454 913 Coils Coil 266 286 - -
Trre12g02454 913 MobiDBLite consensus disorder prediction 1 37 - -
Trre12g02454 913 Gene3D Cupin 504 880 - -
Trre12g02454 913 MobiDBLite consensus disorder prediction 1 15 - -
Trre12g02454 913 Pfam JmjC domain, hydroxylase 744 854 IPR003347 -
Trre12g02454 913 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 41 908 IPR045109 GO:0032454|GO:0033169
Trre12g02454 913 Coils Coil 449 469 - -
Trre12g02454 913 SUPERFAMILY Clavaminate synthase-like 510 891 - -
Trre12g02454 913 ProSiteProfiles JmjC domain profile. 639 871 IPR003347 -
Trre12g02454 913 ProSiteProfiles Zinc finger RING-type profile. 201 247 IPR001841 -
Trre12g02454 913 MobiDBLite consensus disorder prediction 52 73 - -
Trre12g02454 913 FunFam Transcription factor jumonji domain-containing protein 503 880 - -
Trre12g02454 913 SMART cupin_9 620 871 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02454 Trre-Chr12 28239236 28246344 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre12g02454 JmjC 6.3e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02454 K15601 - gmx:100780803 1000.73