Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02443 ATGGACGCTGTTATTTCATTTGCTGCTAAAATTGCTGAATTTACGATTGCACCTATTGGACGTCAATTTGGTTACATATTGTACTACAAGGGCAACCTTGAAAGGGTAAAAAATGATTTCCAAAAGATGGAGGGAATGAAAGACATTGTGCAACACAAAGTTGACGAGGCTAGAAGGAACGGAGAAGAGATTGAAATAATTGTCCAAAACTGGTTGAACAAAGTCGACTACACAGTTGTTGAGGCAAAGAAACTCATTGACACCGAAGGCCATGCAAAAGCTCAATGTTCTATGGGACACTTTCCCAATCTGTTCACTAGGCATCAACTCAGCAGGAAGACCAAAAAGATGTCGCAAGAGATTTCTCAAGTCATAGCAGAAGGAAAATTTGAAACAATTTCTTACCGTGTTCCTGCTCAAGTAACAGTCACGCCGTTTGGCAGAGGTTATGAGGCTTTGGACTCTAGAACATCAATGTTGAATGAGATTTTGTTGGACTTGAAGAATCCCAACATCTTCATTGTTGGGGTCTACGGGATGGGTGGTGCGGGGAAGACAACACTTGTGAAAGAGTTAGCATGGCAAGCAGAGAATGATAGGTTATTTAGTGTTGTAGTTATGGCTACTATAACCGATTCTCCGGATTTGGGAAAAATTCAAGGCCAAATTGCTGATACTTTGGATATGAAATTTAAGAAGGAGACAAAAGAAGGAAGAGCAATGCAATTACGTCAAAGGATAATCAATGAGAAGAGTATTCTCGTTATTCTTGATGACATTTGGGGTAAACTTGATTTGACAGAAGTGGGGATTCCTTTTGGTGATGATCACAAAGGATGCAAGTTGGTGGTGACATCCAGAGATCGTAATGTGTTGAATTCTGAGATGGGCATTCAGAAGGAATTCAGACTTGAAGTTTTACTTGAGGGGGATAGTTGGAAATTGTTTGAGAAAATAGCAGGTGATGTTGTTCAAGATTTCAATATAAAACCAATTGCAGTAGAAGTTGCCAAACTTTGTGCTGGGTTGCCCCTTTTGATAGTTACAGTGGCAAAGGCTTTGAGGAAAAAGCATGTCTCTGATTGGAAGGATGCCTTAAACGAATTAAAGCGATTTGATCAAGAAGGGTTGCATAATAAAGTTTACTCTACTCTGGAATTGAGTTATAATTTTTTAGAGAGAGAGGAGCTGAAGTTGCTATTCTTATTCATTGGTTCCTTTGGATTAGATTACATGTACATTGGAGACCTGTTTTTACGTTATTGGGGGTTAGGCTTATATGGATACTCTGGCACATTGACTGATGCAAGAACCAGATACTACAAACTAATAAACGACCTCAAGGCCTCTTCGTTGTTACTTGAGTCTGAACCTGAATTGATTAGAATTCATGATGTTGTTAGAGATGTGGCTAAATCAATTTCATCTAGGACTCGACCAACCTATAGCGTGTCAAGGTTCACTTTGATACAACAATTTCCAGAGATGGAGCAGCTTCGAAAATGCCATCAGATCATCATGCCTTGGTCTTATATTCACAAGCTTCCTGGGATGCTGGATTGCCCAGAGTTGAAGCTACTTCTACTTCATAATATAGCTGATTATTTGAAAGTCCCCGATGACTTCTTCTCCGAGATGGGAGAGCTAAAGGTAATTGATTTATATGGAATGATGTTAACCCCTTCTCCACCACCATCTCTTTGTCTATTGACAAAAATCCAAACATTGGTTCTTTCTAGATGTATGTTAGAAGACATATCAATAGTTGCAAAGCTGAAAAGTTTAGAGATTCTCAAACTTGAAAGATCTGATATTAAGGAGCTCCCAAAAGAAATAGGACAACTAACTAAGCTTCGAATTTTGAATTTAACCAACTGCTTTGGATTGAGATTCATTCCTGCAAATCTTATTTCAAGCTTAACCTGCTTAGAAGAGTTGTACATGGGGAATTGCTTTATCAATTGGAATGTCAAAGGAAGCAAAGACCAAAGCAACAATGCAAGTCTAGATGAGCTGGGGAATTTGTCTCATCTAACTGCTTTAGACATAACAATTCAAGATGCTTCAGTTTGGCCAAGGGACTTGCAGGTCCTTGCCAAGCTTGAAAGATACAACATATATGTAGGTGATATGTGGAAGTGGTCTTTGGGCTGGTCTGGAAATGCTTCTAAAACTTCAAGAAATCTTAAGATCAACAACAATAAGAGTCCAAGCATTCTTTTAGATCGTGGGTTTAACTTCTTATTAAATTCAGCCGAGGACATGTGCCTTAATAACATACAATGTTTTAGCAATGTCATTTATGAACTAAATAGGGAAGGTTTTCCGCAAGTAAAGAATTTGTGCATTCAAGATAGTACTGAACTGCAGTACATCGTCAACTCAATGGGGTTGGTTCATCCTCATCCGGCTTTACGCAACTTAGAGACTTTGGCTCTTCAAAATCTATTTAGTCTAGAAGAAATATGCCATGGCCAAACTCCAATTCATTCTTTTACCAAACTAAAATATTTTGAAGTTGAAGGTTGCCACAAGTTGACAAAGTTGTTATGGTATTCCCTCGTCAAAAACCTTCCTCAACTTCTTGAAATAAAAATTTTTGATTGCAAAATGATTACGGAAGTAATAGTTTTCCAAATATCTGAGGTTGATATTGAAATCAACAAGATTATGTTCCCCAAGTTGCGCTCTCTTGAACTTGAGCATTTGCCAAGTCTTATTAGTTTCTGTTCTGTGCCATTGGCAGCTGATAAGCATCTCAAAAAGTGTGGGGAAAATTATGATGATACACAGTGCGTACCTGTGGCACTAATTGATCAAAAGGTTGAGATGCCTCACCTTGAACTCTTGAAGCTGTCTAACATCAACTCTAGGAAATTGTGGGATGACAACCTTCCAGGTCATTCTTTCGTTCAAAACTTGACGAGTTTGACAATTGACAAATGTGTTAGCATAACATACGCGTTCTCGTCCTCAGTGGCTAGAGATGTTGTAAACTTGAAGCATCTTTGGATTAGTAATTGCCAAAGGCTGGAGGAGATATTTGTCTCAGATGGAAAGTTTGGCAATGTTTCCAACTCGGTTGTATTTCCAAATTTGGAGACATTGGAAATCTCTCACATGGAACACTTGAAGTCATTATGGCACAATCAACTAGCTCCAAACTCCTTCTGCAAATTGAAGCAATTGGAAATTCAATCCTGCAATAAACTATCAAATGTATTTCCATCTTATGTGCTTGATAAATTACAGAATCTGGAGAAACTGACTGTAACTGATTGTCCTGCGCTAGAAGTTGTATTCGAAACACAAAGTCTACAAGTAGAAGGTGGTAAACAAATGAGGCTGGAAATGCAATTGGGAACTCTCATTTTGGAAAATTTACCGAAGCTGAAACATATATGGAGTGGGAATCCTAATGAAAGCTTCAAGTTTCAAAACCTATGCATACTGAATGTTATGGACTGTGAAAGCCTTAATCATGTTTTTTCCCTTTCTTTGGCTAAAGAGCTTCAGCATCTCCAAGAGCTTTGCATTAGATCATGTGGTGTAGAAAGCATTGTAGCACGGGACGAAATGGCGAACACAAGTTCAAATCCGATACTGATTTTCCCAGAATTAAAATTTCTGAAGTTTGAATTTTTGCAACAACTTCAAAACTTCTACCCTGGATTATATACCTTTGATTGTCCTGTCTTAAGAAACGTGGATGTGTTTCATTGTGACAAGCTCGTACTATTCGAGTCAATGTCTCAATTAAACTACCAAGACAATGTCACAGTTGATATACCACCCCTTCTCTCAATTGAAAAGGTTGTCTCCAAGACAAGTAAGCTTATTCTGAATTGCAAGGATGTCACCATGTTATGCAATGGTCAACTTAATGATGAGCCTATCTACACAGTAAAAGATCTTAGCCTACGATGTTTTCATGATGTGTTAGACAAATTTCCATCTGGTTTCCTCCAAAGATTTATCAATCTTGAAAATCTTGAGGTGATATGTAGTTCTTTCACAGAGGTTTTGTTGAGTGAAAGCTTTGGCACTGTACATTCTGAAGCAACTATGAAGTTGAGAAGACTAAAACTTGATAGATTACAAAACCTCAAGTTTATATGTAGAGAAAAATCTGAGGGACAACTGGTTCTTCAAAATATGGAATATTTGTCTGTATATTTATGCTCTAAACTGAAGAATATATTTCCATCCTCAATGGTATTTGAGAATTTACAGGAGTTAGTGGTGATCGATTGTGATGGATTGGAAAATATTTTGAAATCATCAACAGCTACCAGTTTACAAAAACTTAGAGAATTACACATATATGATTGTGAAATAATAGAAGAAATAGTTGCAAGTGATGATGGGAATGATACTTCTGAGCTAGTTTTTATGAAGTTGGACACTCTAATGCTGAGTAACTTACCAAGGCTAAGAAGTTTTTGCAAGGGAAGACATGACTTTAAATTTCCACTACTTTATGAGTTAATTGTAAAAGATTGTCCCATGATGGAAACTTTCTCACATGGAGTGTTGAATGCGCCAAGGATCAGAAAAGTACGTGTAAATAACAAAGACAGTGATGAATGGTATTGGAATGGTGACATAAATTCTACTATAGGAAAAATTGTAGCGAAAAAAAGAACCCTAGATTGA 4656 0.375 MDAVISFAAKIAEFTIAPIGRQFGYILYYKGNLERVKNDFQKMEGMKDIVQHKVDEARRNGEEIEIIVQNWLNKVDYTVVEAKKLIDTEGHAKAQCSMGHFPNLFTRHQLSRKTKKMSQEISQVIAEGKFETISYRVPAQVTVTPFGRGYEALDSRTSMLNEILLDLKNPNIFIVGVYGMGGAGKTTLVKELAWQAENDRLFSVVVMATITDSPDLGKIQGQIADTLDMKFKKETKEGRAMQLRQRIINEKSILVILDDIWGKLDLTEVGIPFGDDHKGCKLVVTSRDRNVLNSEMGIQKEFRLEVLLEGDSWKLFEKIAGDVVQDFNIKPIAVEVAKLCAGLPLLIVTVAKALRKKHVSDWKDALNELKRFDQEGLHNKVYSTLELSYNFLEREELKLLFLFIGSFGLDYMYIGDLFLRYWGLGLYGYSGTLTDARTRYYKLINDLKASSLLLESEPELIRIHDVVRDVAKSISSRTRPTYSVSRFTLIQQFPEMEQLRKCHQIIMPWSYIHKLPGMLDCPELKLLLLHNIADYLKVPDDFFSEMGELKVIDLYGMMLTPSPPPSLCLLTKIQTLVLSRCMLEDISIVAKLKSLEILKLERSDIKELPKEIGQLTKLRILNLTNCFGLRFIPANLISSLTCLEELYMGNCFINWNVKGSKDQSNNASLDELGNLSHLTALDITIQDASVWPRDLQVLAKLERYNIYVGDMWKWSLGWSGNASKTSRNLKINNNKSPSILLDRGFNFLLNSAEDMCLNNIQCFSNVIYELNREGFPQVKNLCIQDSTELQYIVNSMGLVHPHPALRNLETLALQNLFSLEEICHGQTPIHSFTKLKYFEVEGCHKLTKLLWYSLVKNLPQLLEIKIFDCKMITEVIVFQISEVDIEINKIMFPKLRSLELEHLPSLISFCSVPLAADKHLKKCGENYDDTQCVPVALIDQKVEMPHLELLKLSNINSRKLWDDNLPGHSFVQNLTSLTIDKCVSITYAFSSSVARDVVNLKHLWISNCQRLEEIFVSDGKFGNVSNSVVFPNLETLEISHMEHLKSLWHNQLAPNSFCKLKQLEIQSCNKLSNVFPSYVLDKLQNLEKLTVTDCPALEVVFETQSLQVEGGKQMRLEMQLGTLILENLPKLKHIWSGNPNESFKFQNLCILNVMDCESLNHVFSLSLAKELQHLQELCIRSCGVESIVARDEMANTSSNPILIFPELKFLKFEFLQQLQNFYPGLYTFDCPVLRNVDVFHCDKLVLFESMSQLNYQDNVTVDIPPLLSIEKVVSKTSKLILNCKDVTMLCNGQLNDEPIYTVKDLSLRCFHDVLDKFPSGFLQRFINLENLEVICSSFTEVLLSESFGTVHSEATMKLRRLKLDRLQNLKFICREKSEGQLVLQNMEYLSVYLCSKLKNIFPSSMVFENLQELVVIDCDGLENILKSSTATSLQKLRELHIYDCEIIEEIVASDDGNDTSELVFMKLDTLMLSNLPRLRSFCKGRHDFKFPLLYELIVKDCPMMETFSHGVLNAPRIRKVRVNNKDSDEWYWNGDINSTIGKIVAKKRTLD 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02443 1551 Gene3D - 131 298 IPR027417 -
Trre12g02443 1551 Gene3D Ribonuclease Inhibitor 936 1267 IPR032675 -
Trre12g02443 1551 PRINTS Disease resistance protein signature 174 189 - -
Trre12g02443 1551 PRINTS Disease resistance protein signature 340 354 - -
Trre12g02443 1551 PRINTS Disease resistance protein signature 247 261 - -
Trre12g02443 1551 PRINTS Disease resistance protein signature 613 629 - -
Trre12g02443 1551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 404 IPR027417 -
Trre12g02443 1551 SMART AAA_5 171 312 IPR003593 GO:0016887
Trre12g02443 1551 Gene3D Ribonuclease Inhibitor 472 698 IPR032675 -
Trre12g02443 1551 Pfam NB-ARC domain 161 390 IPR002182 GO:0043531
Trre12g02443 1551 FunFam Probable disease resistance protein At1g61300 150 301 - -
Trre12g02443 1551 SUPERFAMILY L domain-like 938 1253 - -
Trre12g02443 1551 Gene3D Ribonuclease Inhibitor 727 935 IPR032675 -
Trre12g02443 1551 Gene3D - 307 393 IPR042197 -
Trre12g02443 1551 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1270 1512 - -
Trre12g02443 1551 Gene3D Ribonuclease Inhibitor 1271 1528 IPR032675 -
Trre12g02443 1551 SUPERFAMILY L domain-like 462 910 - -
Trre12g02443 1551 SUPERFAMILY RNI-like 1302 1522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02443 Trre-Chr12 28063308 28068581 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02443 150 487 WRKY Transcription Factor Family AT5G45050 26.857 9.60e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02443 - - mtr:25487104 2044.24