Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02442 ATGGCCATGGACGCTGTTATTTCATTTGCTGCTAAAATTGCTGAATTTACGATTGCACCTATTGGACGTCAATTTGGTTACATATTGTACTACAAGGGCAACCTTGAAAGGGTAAAAAATGATTTCCAAAAGATGGAGGGAATGAAAGACATTGTGCAACACAAAGTTGACGAGGCTAGAAGGAACGGAGAAGAGATTGAAATAATTGTCCAAAACTGGTTGAACAAAGTCGACTACACAGTTGTTGAGGCAAAGAAACTCATTGACACCGAAGGCCATGCAAAAGCTCAATGTTCTATGGGACACTTTCCCAATCTGTTCACTAGGCATCAACTCAGCAGGAAGACCAAAAAGATGTCGCAAGAGATTTCTCAAGTCATAGCAGAAGGAAAATTTGAAACAATTTCTTACCGTGTTCCTGCTCAAGTAACAGTCACGCCGTTTGGCAGAGGTTATGAGGCTTTGGACTCTAGAACATCAATGTTGAATGAGATTTTGTTGGACTTGAAGAATCCCAACATCTTCATTGTTGGGGTCTACGGGATGGGTGGTGCGGGGAAGACAACACTTGTGAAAGAGTTAGCATGGCAAGCAGAGAATGATAGGTTATTTAGTGTTGTAGTTATGGCTACTATAACCGATTCTCCGGATTTGGGAAAAATTCAAGGCCAAATTGCTGATACTTTGGATATGAAATTTAAGAAGGAGACAAAAGAAGGAAGAGCAATGCAATTACGTCAAAGGATAATCAATGAGAAGAGTATTCTCGTTATTCTTGATGACATTTGGGGTAAACTTGATTTGACAGAAGTGGGGATTCCTTTTGGTGATGATCACAAAGGATGCAAGTTGGTGGTGACATCCAGAGATCGTAATGTGTTGAATTCTGAGATGGGCATTCAGAAGGAATTCAGACTTGAAGTTTTACTTGAGGGGGATAGTTGGAAATTGTTTGAGAAAATAGCAGGTGATGTTGTTCAAGATTTCAATATAAAACCAATTGCAGTAGAAGTTGCCAAACTTTGTGCTGGGTTGCCCCTTTTGATAGTTACAGTGGCAAAGGCTTTGAGGAAAAAGCATGTCTCTGATTGGAAGGATGCCTTAAACGAATTAAAGCGATTTGATCAAGAAGGGTTGCATAATAAAGTTTACTCTACTCTGGAATTGAGTTATAATTTTTTAGAGAGAGAGGAGCTGAAGTTGCTATTCTTATTCATTGGTTCCTTTGGATTAGATTACATGTACATTGGAGACCTGTTTTTACGTTATTGGGGGTTAGGCTTATATGGATACTCTGGCACATTGACTGATGCAAGAACCAGATACTACAAACTAATAAACGACCTCAAGGCCTCTTCGTTGTTACTTGAGTCTGAACCTGAATTGATTAGAATTCATGATGTTGTTAGAGATGTGGCTAAATCAATTTCATCTAGGACTCGACCAACCTATAGCGTGTCAAGGTTCACTTTGATACAACAATTTCCAGAGATGGAGCAGCTTCGAAAATGCCATCAGATCATCATGCCTTGGTCTTATATTCACAAGCTTCCTGGGATGCTGGATTGCCCAGAGTTGAAGCTACTTCTACTTCATAATATAGCTGATTATTTGAAAGTCCCCGATGACTTCTTCTCCGAGATGGGAGAGCTAAAGGTAATTGATTTATATGGAATGATGTTAACCCCTTCTCCACCACCATCTCTTTGTCTATTGACAAAAATCCAAACATTGGTTCTTTCTAGATGTATGTTAGAAGACATATCAATAGTTGCAAAGCTGAAAAGTTTAGAGATTCTCAAACTTGAAAGATCTGATATTAAGGAGCTCCCAAAAGAAATAGGACAACTAACTAAGCTTCGAATTTTGAATTTAACCAACTGCTTTGGATTGAGATTCATTCCTGCAAATCTTATTTCAAGCTTAACCTGCTTAGAAGAGTTGTACATGGGGAATTGCTTTATCAATTGGAATGTCAAAGGAAGCAAAGACCAAAGCAACAATGCAAGTCTAGATGAGCTGGGGAATTTGTCTCATCTAACTGCTTTAGACATAACAATTCAAGATGCTTCAGTTTGGCCAAGGGACTTGCAGGTCCTTGCCAAGCTTGAAAGATACAACATATATGTAGGTGATATGTGGAAGTGGTCTTTGGGCTGGTCTGGAAATGCTTCTAAAACTTCAAGAAATCTTAAGATCAACAACAATAAGAGTCCAAGCATTCTTTTAGATCGTGGGTTTAACTTCTTATTAAATTCAGCCGAGGACATGTGCCTTAATAACATACAATGTTTTAGCAATGTCATTTATGAACTAAATAGGGAAGGTTTTCCGCAAGTAAAGAATTTGTGCATTCAAGATAGTACTGAACTGCAGTACATCGTCAACTCAATGGGGTTGGTTCATCCTCATCCGGCTTTACGCAACTTAGAGACTTTGGCTCTTCAAAATCTATTTAGTCTAGAAGAAATATGCCATGGCCAAACTCCAATTCATTCTTTTACCAAACTAAAATATTTTGAAGTTGAAGGTTGCCACAAGTTGACAAAGTTGTTATGGTATTCCCTCGTCAAAAACCTTCCTCAACTTCTTGAAATAAAAATTTTTGATTGCAAAATGATTACGGAAGTAATAGTTTTCCAAATATCTGAGGTTGATATTGAAATCAACAAGATTATGTTCCCCAAGTTGCGCTCTCTTGAACTTGAGCATTTGCCAAGTCTTATTAGTTTCTGTTCTGTGCCATTGGCAGCTGATAAGCATCTCAAAAAGTGTGGGGAAAATTATGATGATACACAGTGCGTACCTGTGGCACTAATTGATCAAAAGGTTGAGATGCCTCACCTTGAACTCTTGAAGCTGTCTAACATCAACTCTAGGAAATTGTGGGATGACAACCTTCCAGTGGCTAGAGATGTTGTAAACTTGAAGCATCTTTGGATTAGTAATTGCCAAAGGCTGGAGGAGATATTTGTCTCAGATGGAAAGTTTGGCAATGTTTCCAACTCGGTTGTATTTCCAAATTTGGAGACATTGGAAATCTCTCACATGGAACACTTGAAGTCATTATGGCACAATCAACTAGCTCCAAACTCCTTCTGCAAATTGAAGCAATTGGAAATTCAATCCTGCAATAAACTATCAAATGTATTTCCATCTTATGTGCTTGATAAATTACAGAATCTGGAGAAACTGACTGTAACTGATTGTCCTGCGCTAGAAGTTGTATTCGAAACACAAAGTCTACAAGTAGAAGGTGGTAAACAAATGAGGCTGGAAATGCAATTGGGAACTCTCATTTTGGAAAATTTACCGAAGCTGAAACATATATGGAGTGGGAATCCTAATGAAAGCTTCAAGTTTCAAAACCTATGCATACTGAATGTTATGGACTGTGAAAGCCTTAATCATGTTTTTTCCCTTTCTTTGGCTAAAGAGCTTCAGCATCTCCAAGAGCTTTGCATTAGATCATGTGGTGTAGAAAGCATTGTAGCACGGGACGAAATGGCGAACACAAGTTCAAATCCGATACTGATTTTCCCAGAATTAAAATTTCTGAAGTTTGAATTTTTGCAACAACTTCAAAACTTCTACCCTGGATTATATACCTTTGATTGTCCTGTCTTAAGAAACGTGGATGTGTTTCATTGTGACAAGCTCGTACTATTCGAGTCAATGTCTCAATTAAACTACCAAGACAATGTCACAGTTGATATACCACCCCTTCTCTCAATTGAAAAGGTTGTCTCCAAGACAAGTAAGCTTATTCTGAATTGCAAGGATGTCACCATGTTATGCAATGGTCAACTTAATGATGAGCCTATCTACACAGTAAAAGATCTTAGCCTACGATGTTTTCATGATGTGTTAGACAAATTTCCATCTGGTTTCCTCCAAAGATTTATCAATCTTGAAAATCTTGAGGTGATATGTAGTTCTTTCACAGAGGTTTTGTTGAGTGAAAGCTTTGGCACTGTACATTCTGAAGCAACTATGAAGTTGAGAAGACTAAAACTTGATAGATTACAAAACCTCAAGTTTATATGTAGAGAAAAATCTGAGGGACAACTGGTTCTTCAAAATATGGAATATTTGTCTGTATATTTATGCTCTAAACTGAAGAATATATTTCCATCCTCAATGGTATTTGAGAATTTACAGGAGTTAGTGGTGATCGATTGTGATGGATTGGAAAATATTTTGAAATCATCAACAGCTACCAGTTTACAAAAACTTAGAGAATTACACATATATGATTGTGAAATAATAGAAGAAATAGTTGCAAGTGATGATGGGAATGATACTTCTGAGCTAGTTTTTATGAAGTTGGACACTCTAATGCTGAGTAACTTACCAAGGCTAAGAAGTTTTTGCAAGGGAAGACATGACTTTAAATTTCCACTACTTTATGAGTTAATTGTAAAAGATTGTCCCATGATGGAAACTTTCTCACATGGAGTGTTGAATGCGCCAAGGATCAGAAAAGTACGTGTAAATAACAAAGACAGTGATGAATGGTATTGGAATGGTGACATAAATTCTACTATAGGAAAAATTGTAGCGAAAAAAAGGTAA 4575 0.3749 MAMDAVISFAAKIAEFTIAPIGRQFGYILYYKGNLERVKNDFQKMEGMKDIVQHKVDEARRNGEEIEIIVQNWLNKVDYTVVEAKKLIDTEGHAKAQCSMGHFPNLFTRHQLSRKTKKMSQEISQVIAEGKFETISYRVPAQVTVTPFGRGYEALDSRTSMLNEILLDLKNPNIFIVGVYGMGGAGKTTLVKELAWQAENDRLFSVVVMATITDSPDLGKIQGQIADTLDMKFKKETKEGRAMQLRQRIINEKSILVILDDIWGKLDLTEVGIPFGDDHKGCKLVVTSRDRNVLNSEMGIQKEFRLEVLLEGDSWKLFEKIAGDVVQDFNIKPIAVEVAKLCAGLPLLIVTVAKALRKKHVSDWKDALNELKRFDQEGLHNKVYSTLELSYNFLEREELKLLFLFIGSFGLDYMYIGDLFLRYWGLGLYGYSGTLTDARTRYYKLINDLKASSLLLESEPELIRIHDVVRDVAKSISSRTRPTYSVSRFTLIQQFPEMEQLRKCHQIIMPWSYIHKLPGMLDCPELKLLLLHNIADYLKVPDDFFSEMGELKVIDLYGMMLTPSPPPSLCLLTKIQTLVLSRCMLEDISIVAKLKSLEILKLERSDIKELPKEIGQLTKLRILNLTNCFGLRFIPANLISSLTCLEELYMGNCFINWNVKGSKDQSNNASLDELGNLSHLTALDITIQDASVWPRDLQVLAKLERYNIYVGDMWKWSLGWSGNASKTSRNLKINNNKSPSILLDRGFNFLLNSAEDMCLNNIQCFSNVIYELNREGFPQVKNLCIQDSTELQYIVNSMGLVHPHPALRNLETLALQNLFSLEEICHGQTPIHSFTKLKYFEVEGCHKLTKLLWYSLVKNLPQLLEIKIFDCKMITEVIVFQISEVDIEINKIMFPKLRSLELEHLPSLISFCSVPLAADKHLKKCGENYDDTQCVPVALIDQKVEMPHLELLKLSNINSRKLWDDNLPVARDVVNLKHLWISNCQRLEEIFVSDGKFGNVSNSVVFPNLETLEISHMEHLKSLWHNQLAPNSFCKLKQLEIQSCNKLSNVFPSYVLDKLQNLEKLTVTDCPALEVVFETQSLQVEGGKQMRLEMQLGTLILENLPKLKHIWSGNPNESFKFQNLCILNVMDCESLNHVFSLSLAKELQHLQELCIRSCGVESIVARDEMANTSSNPILIFPELKFLKFEFLQQLQNFYPGLYTFDCPVLRNVDVFHCDKLVLFESMSQLNYQDNVTVDIPPLLSIEKVVSKTSKLILNCKDVTMLCNGQLNDEPIYTVKDLSLRCFHDVLDKFPSGFLQRFINLENLEVICSSFTEVLLSESFGTVHSEATMKLRRLKLDRLQNLKFICREKSEGQLVLQNMEYLSVYLCSKLKNIFPSSMVFENLQELVVIDCDGLENILKSSTATSLQKLRELHIYDCEIIEEIVASDDGNDTSELVFMKLDTLMLSNLPRLRSFCKGRHDFKFPLLYELIVKDCPMMETFSHGVLNAPRIRKVRVNNKDSDEWYWNGDINSTIGKIVAKKR 1524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02442 1524 Gene3D Ribonuclease Inhibitor 942 1248 IPR032675 -
Trre12g02442 1524 SUPERFAMILY RNI-like 1278 1498 - -
Trre12g02442 1524 SMART AAA_5 173 314 IPR003593 GO:0016887
Trre12g02442 1524 Gene3D - 309 395 IPR042197 -
Trre12g02442 1524 Gene3D - 133 300 IPR027417 -
Trre12g02442 1524 Pfam NB-ARC domain 163 392 IPR002182 GO:0043531
Trre12g02442 1524 FunFam Probable disease resistance protein At1g61300 152 303 - -
Trre12g02442 1524 PRINTS Disease resistance protein signature 615 631 - -
Trre12g02442 1524 PRINTS Disease resistance protein signature 176 191 - -
Trre12g02442 1524 PRINTS Disease resistance protein signature 342 356 - -
Trre12g02442 1524 PRINTS Disease resistance protein signature 249 263 - -
Trre12g02442 1524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 406 IPR027417 -
Trre12g02442 1524 SUPERFAMILY L domain-like 940 1229 - -
Trre12g02442 1524 Gene3D Ribonuclease Inhibitor 471 665 IPR032675 -
Trre12g02442 1524 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1245 1488 - -
Trre12g02442 1524 SUPERFAMILY L domain-like 464 912 - -
Trre12g02442 1524 Gene3D Ribonuclease Inhibitor 666 925 IPR032675 -
Trre12g02442 1524 Gene3D Ribonuclease Inhibitor 1251 1501 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02442 Trre-Chr12 28063302 28068469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02442 152 489 WRKY Transcription Factor Family AT5G45050 27.350 9.90e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02442 - - mtr:25487104 1996.09