Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02415 ATGGAAATTGGTTCTTCTTCGGTGCAATTGAATGTGAACGAGGTTGATGTCAATGGACAGAAATTGAATCCGAACAACAAATGTGGAGTCCGTGCTGTTAGAAAGAGAATCTATGATCCTGAAAATGGCACAACTTGTCATCAGTGCCGACAAAAAAGAAAGGTTGTTTGTGCCACGTGTAAGAATCCAAGAGCTGGGAAGCCTTGCCCCCTTAAGTTCTGCGACATGTGCCTCAAGAATAGATATGGAGAAATAGCACAAGAGGTTGATCTTTTGAGTGACTGGATGTGTCCTAAATGCCGTGGCATTTGTAACTGCAGTATCTGCATGAAAGAAAGGGGTCAGAAACCCACTGGTAACCTAGCTTGTAAATCCAAGGCCCGCGGCTTTAAATCCGTGTCTGAAATGCTTAGTAAGAAACCTACATCCGAAAAGGAACTTGCAGCGAGCCTATCAGGGGAACCTACTTCCGAAAAGGAACTTGCAGCGAGTCTATCAGGGGAACCTACTTCCGAAAAGGAACTTGCAGCGAGCCTATCAGGGGGATCTGTGAAGGAAAATTCCCCAGATGGAATTAATGTTTTAAAGGATGGACGTGTGAAAAACAAAAAAGTAAAGCGGGAAATTAAGGAAGAAATTCCTTTTCCCACTGGCAATGAAATGACAAGAGTACTTGACATCGAGTTCACAGAAGAAGATGTTGGAAATGCTTTGCAGTTTCTTGAATTCTGTAGAGTATTTAAAAAGGCTCTTGATATCAAGACAGAAGAAGCGGGAGATATTTTAAGGGCTTTGCGAAGTGGACAAAACACCTTAGTGGTTGAGTTCCAAAGCAAGCTGTTAAATTTGATAATACCTGATTCAGAAATTGAGTCTTCACCCGAAACTGCTAGATGGCTGGAAGTTCTAGAAGAATTAACTATTAAATCTGGTTTTGTACCAAGAGAATTACCGTTGGATTGGCTTAAAAAAGGCAATAGTGGATATTACGGTTTGGACTTGTCGAAGAAGCTTATCCTTCTTAACTTTATCTGCGATGAAGCTCTGGGCACACCGAAGCTAAGGAAGTATATCGATGAACAAAATGGAATATTTGCTGAAGAAAAGAAAGCGGCAAAAACAAAGGCTGCTGAAGCTAAGGAAAAGGAAAGACATCTTAAACAGAAGTTGAAAGATGAGAAAGCAAAGGCTGTGATATCAAATGATGCTTTACTTGGAAAGATTAAAGATGAAGCAGCTAAAGCTCACGCCGAGTTGATTGAGGCAAAGGGCTCAGTTCCTAAACGGAACCAATGGTGTGAGACAATGAGAATTGAGCGCGAGTACTTAGATAACAATGGCAACGGATTCTGGATATTAAGAAGTTGCAACAATGAAGATGTTTTCTTGTTACAAGATGTGAAGATCCATGCTGCTGAAATTGAAGAAAAATGGTTTATTTATGCACCTGAGCAGAAGGAAGAGGTCAACAAGTATATTTCTTCTAGGAGAGATTGA 1497 0.4075 MEIGSSSVQLNVNEVDVNGQKLNPNNKCGVRAVRKRIYDPENGTTCHQCRQKRKVVCATCKNPRAGKPCPLKFCDMCLKNRYGEIAQEVDLLSDWMCPKCRGICNCSICMKERGQKPTGNLACKSKARGFKSVSEMLSKKPTSEKELAASLSGEPTSEKELAASLSGEPTSEKELAASLSGGSVKENSPDGINVLKDGRVKNKKVKREIKEEIPFPTGNEMTRVLDIEFTEEDVGNALQFLEFCRVFKKALDIKTEEAGDILRALRSGQNTLVVEFQSKLLNLIIPDSEIESSPETARWLEVLEELTIKSGFVPRELPLDWLKKGNSGYYGLDLSKKLILLNFICDEALGTPKLRKYIDEQNGIFAEEKKAAKTKAAEAKEKERHLKQKLKDEKAKAVISNDALLGKIKDEAAKAHAELIEAKGSVPKRNQWCETMRIEREYLDNNGNGFWILRSCNNEDVFLLQDVKIHAAEIEEKWFIYAPEQKEEVNKYISSRRD 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02415 498 SMART testlast3 231 290 IPR018501 -
Trre12g02415 498 MobiDBLite consensus disorder prediction 134 192 - -
Trre12g02415 498 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 38 137 IPR018866 -
Trre12g02415 498 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 326 359 IPR028942 -
Trre12g02415 498 Coils Coil 369 396 - -
Trre12g02415 498 ProSiteProfiles DDT domain profile. 231 290 IPR018501 -
Trre12g02415 498 PANTHER OS05G0300700 PROTEIN 30 411 IPR040221 GO:0006355
Trre12g02415 498 MobiDBLite consensus disorder prediction 171 187 - -
Trre12g02415 498 Pfam DDT domain 232 285 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02415 Trre-Chr12 27870199 27874632 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trre12g02415 zf-4CXXC_R1 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02415 - - tpra:123894964 677.937