Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02410 ATGCAGAAAGATCAACTCAAGAAGGATATTAAAGAGGTAAAATTTTTCACCGAGTACGGAGACGCCAACAGATACAAGATTCTCGAAGTTATTGGGAAGGGTAGCTATGGAGTTGTGTGTGCAGCAATTGACACACACACTGGGGGAAAAGTTGCGATCAAGAAGATTCATGATATTTTCGAACACATCTCTGATGCCATTAGAATCCTCAGGGAAGTCAAGTTGCTAAGACTTTTAAGACACCCTGATATCGTTGAGATTAAGCGAATTATGTTGCCACCTTCAAAGAGAGAATTTAAAGATATTTATGTTGTTTTTGAGCTAATGGAGTCCGATCTTCATCAAGTCATCAAAGCTAATGATGACTTGACTCGTGAACACCAACAGTTTTTTCTTTATCAGATGCTTCGTGCATTGAAGTTTATGCATACAGCAAATGTATATCACAGAGACCTTAAGCCCAAGAATATACTGGCGAATGCAAATTGCAAACTCAAAGTCTGTGATTTTGGACTGGCAAGAGTTGCATTCAATGATACCCCAACAACAACATTTTGGACGGATTATGTTGCTACAAGATGGTATAGAGCCCCCGAACTATGCGGGTCTTTCTTTGCTAAGTACACACCGGCAATTGATATATGGAGCATTGGATGCATTTTTGCAGAAGTGCTGACAGGAAAGCCATTGTTTCCTGGTAAAAGCGTTGTGCATCAATTAGATTTGATTACTGATCTTCTTGGAACACCACCACCTGAAATTATCTCAGGAGTTCGAAATGAGAAGGCAAGGAAGTACTTGATGGAAATGCGGAAGAAACTTCCTGTGCCATTTGAACGGAAATTTCCAAATGCTGATCCATTGGCACTTCGTCTATTGCAAAGGCTTCTAGCATTTGATCCAAAGGATCGTCCGACAGCTCAAGAGGCACTTGCTGATCCTTTCTTCAAGGGTTTGGCCAAAATCGAGAGAGAACCTTCTTCCCAGCCAATTTCAAAAATGGAGTTTGAGTTCGAGAGAAGGAGGCTGACAAAAGACGATATTAAGGAACTAATATATCGGGAAATACTGGAATATCATCCTCAACTGCTTAAAGATTACATAAATGGAACTGAAGGCACAAACTTCCTGTATCCTAGTGCAATAGACCAATTCAGAAAGCAATTTGCATATCTTGAAGAGAATAAAGGTAATTCTGGCCCAGTGATTCCTCCAGAAAGAAAGCACGTGTCCCTTCCAAGGTCCACTGTTCTCTCTAGTACAATTCCTCCGAGTATGCAACCATCTTTTCCTCCATATGCAAACAAGCAAATCGCACAAGAGGCATTCAAGATTTCTAAAGCAGCTGAATCAAATTCTCTAAGTCAATCAAAGGGTTCACGACCTCCCCCAAGAGCGCCAGCAGCCAAAACAGGTAGAGTTACAGGGCCAGTTCTCTATGACAATGGGAGAAGCACAAAAGATAATTATGATGCAAGGATCTTCTGCCAAAAGACTACTATTCCTCAAACAATCTCACCACACTGTTTCCAAAGGGTTGCACAGACGAACCAAACTAACACAAAAACTACACCAGAAACATACAAGGATAATTCACAAGTCAAACATCAACTCTCACCGCAGAAGTGTAATGTGCCTGCCAGACCAGCTATCGATCTTAATACCAATCCATACCACGAACAGGGCAAGAATGATCTGTTAAACGATCCTGTCACCGTTATTGACGCGAAATTGTTGCATGCACAATCTCAATTTGGTGCAGCTGGTGCAGCAGCAGTAGCTGTTGCTGCTCACAGGCATTCTGGGGGCCTCCAGTGCGGCCTTCAGTGCGGCCTTCAGTGCGGATTGTCATAG 1854 0.4218 MQKDQLKKDIKEVKFFTEYGDANRYKILEVIGKGSYGVVCAAIDTHTGGKVAIKKIHDIFEHISDAIRILREVKLLRLLRHPDIVEIKRIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHQQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDTPTTTFWTDYVATRWYRAPELCGSFFAKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPPPEIISGVRNEKARKYLMEMRKKLPVPFERKFPNADPLALRLLQRLLAFDPKDRPTAQEALADPFFKGLAKIEREPSSQPISKMEFEFERRRLTKDDIKELIYREILEYHPQLLKDYINGTEGTNFLYPSAIDQFRKQFAYLEENKGNSGPVIPPERKHVSLPRSTVLSSTIPPSMQPSFPPYANKQIAQEAFKISKAAESNSLSQSKGSRPPPRAPAAKTGRVTGPVLYDNGRSTKDNYDARIFCQKTTIPQTISPHCFQRVAQTNQTNTKTTPETYKDNSQVKHQLSPQKCNVPARPAIDLNTNPYHEQGKNDLLNDPVTVIDAKLLHAQSQFGAAGAAAVAVAAHRHSGGLQCGLQCGLQCGLS 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02410 617 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 362 - -
Trre12g02410 617 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02410 617 MobiDBLite consensus disorder prediction 448 483 - -
Trre12g02410 617 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Trre12g02410 617 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Trre12g02410 617 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Trre12g02410 617 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02410 617 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Trre12g02410 617 CDD STKc_TDY_MAPK 24 361 - -
Trre12g02410 617 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02410 617 FunFam Mitogen-activated protein kinase 14 119 - -
Trre12g02410 617 SUPERFAMILY Protein kinase-like (PK-like) 20 320 IPR011009 -
Trre12g02410 617 FunFam Mitogen-activated protein kinase 111 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02410 Trre-Chr12 27834716 27839101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02410 1 604 MAP Kinase Gene Family AT1G53510 70.874 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trre12g02410 Pkinase 6.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02410 - - gmx:100800878 1018.45