Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02395 ATGGCTAGGAGGAAAGTCAAGCTTGCCTACATAATCAATGACTCAAAGAGGAGGATAACATTCAACAAAAGAAAAAAGGGTTTAATCAAAAAGGTTGATGAAATAACCACACTCTGCGGAATCGAGGCATGTGCAATAATCTTCGGTGAAAATAATGCTCAACCAGAGATTTGGCCATCACCAGTGGGAGTCCATACCGTGCTGTCAAGGTTTAGGGGATTGCCTGAAACCGAACAGAGCAAAAAGATGCAGAATCAAGAGAGTTTCTTGAGGGAAAAGATACAAAAGGGACAAGAACAATTGAACAAACTAAGGAATGAAAACAGAAGAAAGGAACTGACGCAACTCATGTTTCAATGCATTCATGCTAGCCAGATTGCTGACAATGTTGGCATGAATGATCTCAATGGTCTCTCTTGGATGATTGATCAAAATATGAAACATATCGAAAGGCGTATGGAAGAGATTCAAGCTGCACCGGTGGTCGAAAGGCGTATGGAAGAGAGGCGAGCTGCAGCGGTAGTCGAAAGTCGTGCTGAAAATGTGATTGGAGCTGCCTCGGTGGTCGAAAATCGTGCTGAAAATGTGATTATTGGAGCTGCCCCGGTGGTCGAAAATCGTGCTGAAAATGTGATTGGACGGGAGCTGGGGATGGAGAACAATGTTGGTGCAATGCAGCCACAACCTTGGTCATTGGACTTCATGACCAACCACAACAATTTTGGTGATCTGTTGCCATTTGATGAAAATGGTAACAATGCACCAAATGGTTTCTGGCCTTAA 783 0.4355 MARRKVKLAYIINDSKRRITFNKRKKGLIKKVDEITTLCGIEACAIIFGENNAQPEIWPSPVGVHTVLSRFRGLPETEQSKKMQNQESFLREKIQKGQEQLNKLRNENRRKELTQLMFQCIHASQIADNVGMNDLNGLSWMIDQNMKHIERRMEEIQAAPVVERRMEERRAAAVVESRAENVIGAASVVENRAENVIIGAAPVVENRAENVIGRELGMENNVGAMQPQPWSLDFMTNHNNFGDLLPFDENGNNAPNGFWP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02395 260 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre12g02395 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre12g02395 260 PANTHER MADS BOX PROTEIN 3 153 - -
Trre12g02395 260 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Trre12g02395 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Trre12g02395 260 Coils Coil 87 114 - -
Trre12g02395 260 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Trre12g02395 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre12g02395 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre12g02395 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre12g02395 260 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Trre12g02395 260 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02395 Trre-Chr12 27644763 27645813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02395 1 154 Type I MADS-box Gene Family AT5G48670 51.948 8.46e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre12g02395 SRF-TF 3.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02395 - - tpra:123915093 250.751