Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02392 ATGGATGCTACAACAGGTCAAAGTCTCTATCCATTGCACCATAGCAAAACTATTCACCTGGTAAGGCATGCCCAAGGAGTTCATAATGTGGAAGGAGAGAAGAACCATGATGCTTACTTATCGGACGATCTTTTTGATGCAAACCTAACCCCTCTTGGCTGGAAGCAGGTAGTTGCCGATCGAATTCTTTTGAATATCATATTGTCAAGTAAACCAAAATCCACAATATCGAGGCTACACTTCTTGGTGTTGATAAGTTTGGCCACAAGTGTTACGACAAAACTGAAAGCACGCAGTATGTTTGATACCACTGCAGAAGAGGCTGAATTACCTCGCACCCATCCTATTCGATTGGGTCTGGCTTTGAATTTCTCAGTTTTCTATTATGAGATCTTGAACTCCAGATAG 408 0.4191 MDATTGQSLYPLHHSKTIHLVRHAQGVHNVEGEKNHDAYLSDDLFDANLTPLGWKQVVADRILLNIILSSKPKSTISRLHFLVLISLATSVTTKLKARSMFDTTAEEAELPRTHPIRLGLALNFSVFYYEILNSR 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02392 135 Gene3D - 3 71 IPR029033 -
Trre12g02392 135 SUPERFAMILY Phosphoglycerate mutase-like 16 59 IPR029033 -
Trre12g02392 135 Pfam 14-3-3 protein 104 134 IPR023410 -
Trre12g02392 135 Gene3D - 85 135 IPR036815 -
Trre12g02392 135 SUPERFAMILY 14-3-3 protein 102 134 IPR036815 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02392 Trre-Chr12 27578511 27582159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02392 103 134 14-3-3 family AT2G42590 84.375 9.50e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02392 - - mtr:11425342 112.079