Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02378 ATGGTGGGGTTCCAGAACGAGCATATGCCTGGGAACATTTATAGTAGTAGTCCAGGTCGTGTTGAACGACTTGTGAGAGAAAGTGCTGTAGCAGCAGTAAGGGCTCTTAGTAATGGATATGAAAGGGAAGATGCAAAACCTGTTAGACAACGGCTTTTGGTTGTGGCTAATAGACTGCCAGTGTCTGCTGTTAGGAAAGGTGAGGATACTTGGTCTCTGGAGATCAGTGCTGGTGGCTTGGTGAGCGCGCTTTTAGGTGTGAAGGAGTTTGAAGCGAGGTGGATAGGTTGGGCTGGAGTCAATGTTATGGATGCGGTTGGACAGAAGTCACTCTCCGATGCGTTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTACTGAAGACATTGTTAATCAGTACTATAATGGCTATTGCAATAACATATTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGATCGTCTAACGACAACTCGTGGATTCCAGTCTCAATTTGATTCGTATCAGCAGGCAAATCAAATGTTTGCTGATGTTGTAAATAAAGTCTATGAAGAGGGAGATATTGTTTGGTGCCATGATTACCATCTTATGTTTCTACCACAATGCTTGAAGAAATTCAACAGCAAAATGAAAGTTGGTTGGTTTCTCCATACCCCGTTTCCATCTTCTGAAATTCACAGGACACTACCATCTCGTTCAGAGCTCCTGCGTGCAGTTCTTGCTGCAGATTTGGTCGGTTTTCACACCTATGATTATGCACGACACTTTGTTAGTGCTTGTACTCGCATTCTTGGACTTGAGGCCACACCAGAAGGGGTTGAGGATCAAGGGAAACTGACTCGAGTTGCTGCATTTCCAATTGGTATAGACTCAGACCGCTTCATTCGTGCGCTTGACCATCCTCAAGTCCAAGGTCCCATCAAAGACTTACAAGAAAGATTTAAAGGCAGAAAGGTTATGCTAGGTGTTGATCGCCTTGATATGATTAAAGGAATTCCTCAAAAACTTCTAGCTTTTGAGAAATTTTTGGAAGAAAATGAAGATTGGCGAGAAAAAGTTGTTCTGCTTCAAATTGCCGTGCCAACAAGAACAGATGTTCCGGAGTATCAAAAGCTTACGAGCCAGGTTCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACACTGACTGCTGTTCCTATACATCACCTGGACCGCACTCTTGAGTTTCATGCACTGTGTGCTTTGTATGCTGTTACAGATGTAGCAATTGTCACCTCATTGAGGGATGGAATGAATCTTGTCAGCTACGAGTTTGTGGCCTGCCAAGAAAAAAGGAAGGGGGTTCTCATTCTTAGTGAATTTGCCGGTGCTGCGCAGTCTCTTGGTGCTGGGGCACTTCTGGTCAATCCCTGGAACATCTCAAAAGTTGCTGAAGCAATTGCCAAAGCTCTGAACATGCCATCTGCTGAGAGAGAGAAACGACATAGGCACAACTTCCATCATGTAACAACCCACACTGCACAGGAATGGGCAGAAACTTTTGTTAGCGAGCTAAATGATACTGTTGTTGAGGCTCAGCTAAGGACAAAACAAGTTCCACCACGGCTCCCAACTCCAAAAGCAATTCAACAATATATGAAGGCAACTAATCGATTGCTTATTTTGGGATTCAATGGAACTTTAACTGAGCCAGTTGAGAGAAAAGGTGATCAATTGAAAGAAATGGAACTCTCAGTGCATCCAGAACTGAAACAACCCTTGACACAACTTTGCAGTGATCCAAATACTACAGTTGTCGTGCTTAGTGGAAGTGGTAGAACACTTCTAGATGAAAACTTTAGAGAATATAACACTTGGCTGGCAGCGGAGAATGGAATGTTTTTAAACTCTTCAAATGGAGAATGGATGACAACAATGCCAGAACAACTAAATATGGAATGGGTTGACAGCGTAAAGCATATTTTTGAGTATTTCACCGAAAGAACACCTCGGTCACATTTTGAAGAAAGGGAAGCTTCACTTGTATGGAATTACAGACATGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTGCAACATCTCTGCTCAGGTCCAATTTCAAGTGCATCAGTTGAAGTAGTTCAAGGGAGCCGATCAGTTGAGGTGCGAGCTGCTGGTGTTACAAAGGGAGCAGCCATTGACCGCATCCTGGGGGAGATAGTTCACAGTAAATCCATGACAACACCAATTGATTATGTTCTGTGTATAGGACATTTTCTGGGAAAGCAGGATGAAGACATATACGACTTTTTTGAGCCAGAGCCTTCTTGTTATGGTGCGAGTCTTCAACGAAGCAAGTTAACAGATGCAGCTAAGTTTCCTAATGAGAAGGCATCACCTATGAAGATCCCAGCAATTAAAAATGGATTCAAGTCAACAAATCAAAACAAGGGACAACGACCTATCTCAAATTCAGAGAAGAAAACAAATAATTCCAGTCGCACAGCACGGAAGCCAGCTCCCGAAAAGATCTCTTGGAATGTCCTTGACCTCAAGAAGGAGAATTACTTCTCATGTGCTGTTGGGAGAACTCAAACAAATGCTCGCTTTACGCTTCCATCATCTGATGAGGTTGCTGAATTTCTGAAGAAACTTGCACATACATCATCTAGTAATTAA 2658 0.43 MVGFQNEHMPGNIYSSSPGRVERLVRESAVAAVRALSNGYEREDAKPVRQRLLVVANRLPVSAVRKGEDTWSLEISAGGLVSALLGVKEFEARWIGWAGVNVMDAVGQKSLSDALAEKRCIPVFLTEDIVNQYYNGYCNNILWPLFHYLGLPQEDRLTTTRGFQSQFDSYQQANQMFADVVNKVYEEGDIVWCHDYHLMFLPQCLKKFNSKMKVGWFLHTPFPSSEIHRTLPSRSELLRAVLAADLVGFHTYDYARHFVSACTRILGLEATPEGVEDQGKLTRVAAFPIGIDSDRFIRALDHPQVQGPIKDLQERFKGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENEDWREKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRTLEFHALCALYAVTDVAIVTSLRDGMNLVSYEFVACQEKRKGVLILSEFAGAAQSLGAGALLVNPWNISKVAEAIAKALNMPSAEREKRHRHNFHHVTTHTAQEWAETFVSELNDTVVEAQLRTKQVPPRLPTPKAIQQYMKATNRLLILGFNGTLTEPVERKGDQLKEMELSVHPELKQPLTQLCSDPNTTVVVLSGSGRTLLDENFREYNTWLAAENGMFLNSSNGEWMTTMPEQLNMEWVDSVKHIFEYFTERTPRSHFEEREASLVWNYRHADVEFGKLQARDMLQHLCSGPISSASVEVVQGSRSVEVRAAGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKQDEDIYDFFEPEPSCYGASLQRSKLTDAAKFPNEKASPMKIPAIKNGFKSTNQNKGQRPISNSEKKTNNSSRTARKPAPEKISWNVLDLKKENYFSCAVGRTQTNARFTLPSSDEVAEFLKKLAHTSSSN 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02378 885 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 44 879 IPR001830 GO:0003824|GO:0005992
Trre12g02378 885 CDD GT20_TPS 51 516 IPR001830 GO:0003824|GO:0005992
Trre12g02378 885 MobiDBLite consensus disorder prediction 796 834 - -
Trre12g02378 885 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 298 500 - -
Trre12g02378 885 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 50 519 - -
Trre12g02378 885 Pfam Glycosyltransferase family 20 51 516 IPR001830 GO:0003824|GO:0005992
Trre12g02378 885 Gene3D - 551 732 IPR023214 -
Trre12g02378 885 Gene3D - 638 718 - -
Trre12g02378 885 MobiDBLite consensus disorder prediction 801 831 - -
Trre12g02378 885 CDD HAD_TPP 549 767 - -
Trre12g02378 885 NCBIfam trehalose-phosphatase 547 805 IPR003337 GO:0003824|GO:0005992
Trre12g02378 885 Gene3D Glycogen Phosphorylase B; 43 297 - -
Trre12g02378 885 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 51 516 IPR012766 GO:0003825|GO:0005992
Trre12g02378 885 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 638 718 - -
Trre12g02378 885 SUPERFAMILY HAD-like 548 880 IPR036412 -
Trre12g02378 885 Gene3D Glycogen Phosphorylase B; 298 500 - -
Trre12g02378 885 Pfam Trehalose-phosphatase 554 768 IPR003337 GO:0003824|GO:0005992
Trre12g02378 885 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 43 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02378 Trre-Chr12 27443318 27451305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02378 41 884 Trehalose Biosynthesis Gene Families AT1G78580 77.236 0.0 1379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02378 K16055 - gmx:100789554 1430.23