Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02370 ATGAAAATTCAGTGTAACGTGTGTGAAGGTGCAGAAGCTAAGGTTCTTTGTTGTGCTGATGAAGCTGCTTTGTGTTGGGAATGTGATGAGAAAGTTCATGCTGCTAATAAGCTTGCTAGTAAACATCAAAGAGTTCCTCTTTCTACATCTTCTTCTCATATGCCTAAATGTGATATTTGTCAGGAAGCATTCGGCTATTTCTTTTGTCTCGAGGATCGCGCTTTACTCTGTCGAAAATGTGATTTAGCAATACACACAGCAAATGCTTTTGTCTCAGGACATCAAAGGTTTCTTCTCACCGGTGTAAAAGTCGGTCTTGAAGATGCTGATCCCGGCGCTTCCTCAAATTCCATGAAATCAGATTCTTATGAGAAAATTTCCGATACAAAATCTTCTTCTATATCTAGAAAGGTTTCCACAATGCCTCAGTCATCAGAATACAATGAAATGTTTCCTACTGATCAAGGTGGAAGAGTTATGGAATTTCCACCAGCAAAGGTTTCCTATGGCGGCGGTTCTTCATCTGGAAACATGTCACAATGGACAATTGATGAATTTTTCGGCGTAAATGATTTCAGTCAGAATTATAACTACATTGATGGATCATCAAGGGCTGACAGTGGTAAGCTTGAGGATTCTGATTCTCCTATTTTAAGATCCAACGAAGAAGAAATGGAATACGACGACTACATGGACCGTGTACCAGATTCATCTTGGACAGTTCCTCAAATCCCTTCACCTCCTACAGCTTCTGGACTATACTGGCCGAAAAACCCTCGGTATGCATCCGATAATGCTCTATTTGTTCCTGACGTAGGCATTTCTACCATGCAACAACCTCAGAATAGTAGTAATTTTTCAAGACCGCGGTATCATCATTAA 882 0.4036 MKIQCNVCEGAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTANAFVSGHQRFLLTGVKVGLEDADPGASSNSMKSDSYEKISDTKSSSISRKVSTMPQSSEYNEMFPTDQGGRVMEFPPAKVSYGGGSSSGNMSQWTIDEFFGVNDFSQNYNYIDGSSRADSGKLEDSDSPILRSNEEEMEYDDYMDRVPDSSWTVPQIPSPPTASGLYWPKNPRYASDNALFVPDVGISTMQQPQNSSNFSRPRYHH 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02370 293 SMART bboxneu5 52 99 IPR000315 GO:0008270
Trre12g02370 293 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre12g02370 293 CDD Bbox1_BBX-like 5 47 - -
Trre12g02370 293 MobiDBLite consensus disorder prediction 205 226 - -
Trre12g02370 293 MobiDBLite consensus disorder prediction 201 254 - -
Trre12g02370 293 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Trre12g02370 293 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Trre12g02370 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 273 - -
Trre12g02370 293 MobiDBLite consensus disorder prediction 110 148 - -
Trre12g02370 293 Gene3D Classic Zinc Finger 1 92 - -
Trre12g02370 293 MobiDBLite consensus disorder prediction 113 148 - -
Trre12g02370 293 FunFam B-box zinc finger protein 22 1 93 - -
Trre12g02370 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre12g02370 293 CDD Bbox1_BBX-like 56 99 - -
Trre12g02370 293 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02370 Trre-Chr12 27382266 27384516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02370 1 276 C2C2-CO-like Transcription Factor Family AT1G78600 47.604 1.51e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Trre12g02370 zf-B_box 8.8e-07 No_clan