Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02360 ATGAGCATGAATTTCTCTCTATTACTCAATATTTTGCTTCTTGCCTTTTCTTTGATCATAACTTCATTTACTAGTGGAGCTATTCTGTCACAACAAGAAGTACAAGTTATGAAAGACATAGGAAGAACACTTGGGAAGAATGATTGGGATTTCAGCAAAGATCCATGTAGTGGAGAAAGTAACTGGACATCTTCTGTGCAAGTGAAAGGGTTTGAAAATGCTGTCACTTGCAATTGTTCTTTTGTTAATGCTACTGTCTGCCATATTGTTAGCATTGTTCTGAAGTCACAAAATCTTTCTGGCACACTTCCAACAGAACTTGTGAAATTGCCTTACCTCCAACAAATTGATCTCACAAACAACTACCTTAATGGTACAATTCCACCACAATGGGGTTCCATGATCAATCTTGTCAACATTTCACTAATAGGAAATCGGTTAACTGGTCCAATCCCAAAAGAGATTGGAAAAATCACCACCCTGCAAAAGTTGATCCTGAAGTTCAATCAATTATCTGGAAACCTTCCTCCAGAGCTTGGGAATCTGCACCAGCTTGAACGACTGCTTCTTTCCTCGAACTATTTTACTGGAAATATACCTGCAACATATGCTAAGCTCACTAAACTGAAGCACATTCGACTTTGCGATAATCAATTCTCTGGACCTATACCAGATTTCATTCAGAGTTGGACAAGTCTTGAAAGGATGGTGATGCAAGGGAGTGGTTTGAGTGGCCCAATTCCTTCAGGAATAACATATCTAAAAAACCTCAATGATTTGAGAATAAGTGACTTGAAAGATTCAGATTCTACTTTTCCACTGCTACTTAACTTGACAAATCTGGAAACATTAGTACTGAGGAGTTGCAATCTTATAGGAAGTGTACCTGAATATCTCGGAACTATTACCAATTTACAATCATTAGACCTCAGTTTTAACAAATTAAGTGGACCGATTCCAAACACCTTGGGTGGCCTCAAGAACACAAATTTACTATACTTAACTGGAAACCTTTTTACCGGACCACTTCCAAATTGGATTGCTAGACCAGACTACACAGATCTATCATATAACAATTTGAGCATTGAAAATCCAGAGCAGTTGACATGTCAACAAGGAACTGTGAACTTGTTTGCATCATCTTCAAAGAGAAGTAACTTGGGAATGGTTTCATGTTTGGGGAACAATAGCTGTCCTAAACATCGGTACTCTCTCCGTATAAATTGTGGTGGTAAGCTCATAACTTATAATGAAAGCTTGACATATGAAGATGATTCAAATGAAATTGGACCTGCAAGCTTTCGGCGAACTGCATCAAACTGGGCACTTAGCAACACTGGTCACTTCTTCGATAGAAATAATAGCCTTGTGGACTACTCTACCTGGTCTAATAAAACTAATCTTGCCATGAAAAATGCCGAACTGTATATGGATGCACGTGTTTCTCCTCTGTCTCTAACATATTACGGATTTTGCCTGGGTAACGGAAACTACACAGTAAATCTCCATTTTGCGGAGATAATGTTTACGGATGATCAAACATATAGCAGCCTTGGAAGGCGCATATTTGACATCTATATTCAGGGAAGGTTGGTGCTGAAGGATTTCAATATTGCAAAAGAAGCCGGTGGAGTTGGTAAGGCAATCATAAAGAAGTTTACCGCTACTGTGACTAGTAATACGTTGGAGATTCGCCTTCGTTGGGCTGGCAAAGGGACCACTGGAATCCCATTTGATTCAGTATATGGTCCTCTTATATCGGCTATATCGGTTGATCCTGACTTTATACCCCCGGCGGAAAAGGGAAGTAGCATACCTGTTTGGGCTATTGTTGCAGTTGTAGTTTCTGGTGTACTAGTTATATTCATGGTATTTATTATTGCTTGGTGGAGAAGATTTCGACGACAGATAGGTCCATTAGAAAGAGAGCTAAAAGGTTTAGAATTCCAACCTGGGTTATTTACGTTACGACAAATCAAAGCAGCGACTAACAACTTCGATATTGAGTTTAAGATTGGAGAAGGAGGGTTTGGTTCTGTTTACAAGGGTGTTCTTTCGGACAGCACAATAGTAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGCGAATTTATAAATGAGATTGGCTTGATTTCGGCTTTGCAGCATCCTTGTCTAGTTAAGCTATATGGTTGTTGTATGGAAGGTGATCAATTGCTGCTGATATATGAATACATGGAAAACAATAGCCTTGCTTGTGCTTTGTTTGCCAAAGAAAAAGATCAATTGAAATTGGCTTGGTCGACAAGGAAGAAAATTTGCATCGGTATTGCTAGAGGTTTGGCTTACCTTCATGAAGAGTCGAGGTTAAAGATAGTTCACAGAGACATCAAGGCAACGAATGTGTTACTCGATAAAGATCTCAATCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTAAAGATGACGGATATACCCACATGACCACTAGAGTAGCCGGCACTTATGGATACATGGCTCCCGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATAGTTAGTGGGAAACACAACACCATGAACCAGCCCAAGGATGAATGCTTCTCTCTTGTTGATTGGGTGCGTCTCTTGAACGAAGAAGGTAACATAATGGACTTAGTTGATGAGAGGTTAGGTGAAGAATTCAAAAAAGAGGAAGCAATGATCATGATCAATGTGGCACTTTTATGCACTCATGTTTCTCCGACGCACAGACCAACAATGTCATCAGTGGTAAGCATGCTTGAAGGAAAATCTGTTGTTCAAGAAGTTGTTTCTGACACAAGCCAAGTTTTTGAAGGAAAAAAGCTAAAGATGATTCAACAAAATGAAAAAAATGATACATCTGAGATTGAGACTACTGAAGAAGAGAGTATCTTAATAGATTCAACTGCAGAATATATGTCTGATGCAGATCTACATTCTACCAACATGGATTCTCCTTATGCAAGTTTCAACACTTTGTAA 3033 0.3904 MSMNFSLLLNILLLAFSLIITSFTSGAILSQQEVQVMKDIGRTLGKNDWDFSKDPCSGESNWTSSVQVKGFENAVTCNCSFVNATVCHIVSIVLKSQNLSGTLPTELVKLPYLQQIDLTNNYLNGTIPPQWGSMINLVNISLIGNRLTGPIPKEIGKITTLQKLILKFNQLSGNLPPELGNLHQLERLLLSSNYFTGNIPATYAKLTKLKHIRLCDNQFSGPIPDFIQSWTSLERMVMQGSGLSGPIPSGITYLKNLNDLRISDLKDSDSTFPLLLNLTNLETLVLRSCNLIGSVPEYLGTITNLQSLDLSFNKLSGPIPNTLGGLKNTNLLYLTGNLFTGPLPNWIARPDYTDLSYNNLSIENPEQLTCQQGTVNLFASSSKRSNLGMVSCLGNNSCPKHRYSLRINCGGKLITYNESLTYEDDSNEIGPASFRRTASNWALSNTGHFFDRNNSLVDYSTWSNKTNLAMKNAELYMDARVSPLSLTYYGFCLGNGNYTVNLHFAEIMFTDDQTYSSLGRRIFDIYIQGRLVLKDFNIAKEAGGVGKAIIKKFTATVTSNTLEIRLRWAGKGTTGIPFDSVYGPLISAISVDPDFIPPAEKGSSIPVWAIVAVVVSGVLVIFMVFIIAWWRRFRRQIGPLERELKGLEFQPGLFTLRQIKAATNNFDIEFKIGEGGFGSVYKGVLSDSTIVAVKQLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLACALFAKEKDQLKLAWSTRKKICIGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLKDDGYTHMTTRVAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVSGKHNTMNQPKDECFSLVDWVRLLNEEGNIMDLVDERLGEEFKKEEAMIMINVALLCTHVSPTHRPTMSSVVSMLEGKSVVQEVVSDTSQVFEGKKLKMIQQNEKNDTSEIETTEEESILIDSTAEYMSDADLHSTNMDSPYASFNTL 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02360 1010 Pfam Malectin domain 404 589 IPR021720 -
Trre12g02360 1010 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Trre12g02360 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Trre12g02360 1010 Gene3D Phosphorylase Kinase; domain 1 640 741 - -
Trre12g02360 1010 FunFam Putative LRR receptor-like serine/threonine-protein kinase 742 949 - -
Trre12g02360 1010 Pfam Leucine rich repeat 279 338 IPR001611 GO:0005515
Trre12g02360 1010 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 402 594 - -
Trre12g02360 1010 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 33 193 - -
Trre12g02360 1010 CDD STKc_IRAK 672 939 - -
Trre12g02360 1010 Coils Coil 959 979 - -
Trre12g02360 1010 Pfam Protein tyrosine and serine/threonine kinase 669 937 IPR001245 GO:0004672|GO:0006468
Trre12g02360 1010 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 965 - -
Trre12g02360 1010 SMART serkin_6 666 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02360 1010 SUPERFAMILY Protein kinase-like (PK-like) 648 940 IPR011009 -
Trre12g02360 1010 Gene3D Ribonuclease Inhibitor 201 269 IPR032675 -
Trre12g02360 1010 Gene3D Transferase(Phosphotransferase) domain 1 742 954 - -
Trre12g02360 1010 SUPERFAMILY L domain-like 83 360 - -
Trre12g02360 1010 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 635 741 - -
Trre12g02360 1010 Gene3D Ribonuclease Inhibitor 46 200 IPR032675 -
Trre12g02360 1010 Gene3D - 400 593 - -
Trre12g02360 1010 Gene3D Ribonuclease Inhibitor 270 399 IPR032675 -
Trre12g02360 1010 ProSiteProfiles Protein kinase domain profile. 666 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02360 1010 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 199 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02360 Trre-Chr12 27114863 27122910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02360 20 967 Receptor kinase-like Gene Family AT1G53420 53.095 0.0 982
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02360 PK_Tyr_Ser-Thr 2.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02360 - - psat:127081874 1535.01