Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02359 ATGAAGCTTATCATCATGAACATGTCTTTCCCTCTATTATTCCAAATTTTGCTTCTGGTCATTTGTTTGATCTCTTCATTTGCTAGTGGAGCTACTCTGTTAGAAGAAGAAGTACAAGTTATGAAAGATATAGGAAGGAGACTTGGGAAGAAGGATTGGGATTTCAGCAAAGATCCATGTAGTGGACAAAGTAACTGGACATCTTCTGTACAAGTCAGTGGATTTCAAAATGCTGTAACTTGCAATTGTTCTTTTGCCAATGCTACTGTCTGCCATATTGTTAGCATTGTTCTGAAGTCACAAAATCTTTTTGGCACACTTCCAGGTGAATTTGAGAGATTGCCTTACCTCCATGAAATTGATCTCACACGTAACTACCTTAATGGTACAATCCCTCCACAATGGGCTTCCATCAAACTTGTCAACATTTCACTATATGGAAACCGATTAACAGGTCCAATCCCAAAAGAATTTGGAAAAATCACCACCCTGCAAAAGTTGGATCTTGAGTTCAATCAATTATCTGGACAGCTTCCTCCAGAGCTTGGAAATCTTCACCAACTTGAAATTTTGCTTCTTAACTCCAATAATTTTACTGGAAATTTACCTGCAACATTTGCTAAGCTCACTAAGTTGAAGCACATTCGACTCGGCGATAATCAATTCTTTGGAACTATACCTGATTTCATTCAAAGCTGGACAAGTCTTGAGAGGCTGGTGATGCAAGGGAGTGGTTTTTGTGGACCAGTTCCGTCTGGAATTTCATATCTAAAAAACCTCACTGACTTGAGAATAAGTGACTTGAAAGGATCAGATTTTCTTTTTCCACAACTTAGTAACTTGACAAACCTCGAAACATTAATACTGAGGAGTTGCAATCTTATAGGAACAGTTCCTGAATATCTTGGAAATATTACCAATTTAAGAAACTTAGACCTCAGCTTTAACAAATTAAGTGGACAGATTCCGAACACCTTGGGCAGCCTCGAGAACATAAATATACTATACTTAACTGGAAACAATTTTAATGGACCACTACCAAATTGGATAGCAAGACCAGACTACACAGATCTTTCATATAACAACTTGAGCATTGAAAATCCAGAGCAGTTAACATGTCAACAGGGAACCGTGAACTTGTTTGCATCATCTTCAAATGGAAGTAACTTGGGAATGGTTTCATGTTTGGGGAACAATGTCTGTCCTAATACTTTGTACTCTCTTCATATAAATTGTGGTGGTAAGCGCATAACTTCTAATAATAGCTTGACATATGATGATGATTCAAATGAAGTTGGACCAGCAAGCTTTCACCGGACAGAATCGAACTGGGCCCTTAGCAATAATGGTCATTTCTTTGATAGTGGCCTTGCGGACTACTATACTTGGTCTAATAAAACTAACCTTTCCATGGAAAATGCCGAATTGTATATGGATGCACGTGTTTCTCCTATTTCTCTAACTTATTATGGATATTGCCTCGGAAATGGAAACTACACGGTGAATCTCCATTTCGCAGAGATAATGTTCACCGATGATCAAACATATAATAGCCTTGGAAGGCGTATATTTGACATCTATATTCAGAGAAGGTTGGTGCTGAAGGATTTCGATATTGCAGAAGAAGCTGGTGGAGTTGGAAGGGCAATTATAAAGAAGTTCACTGCTATTGTGACTACAAATACCTTGGAGATTCGCCTTAATTGGGCTGGGAAAGGAACAACTGGTATTCCATTTGGATCAGTATATGGTCCTCTCATATCGGCTATATCGGTTGATCCTGATTTTACACCCTCGGTGGAAAAGGGAAGTGGCATACCTGTGTGGGATATTGTTATAATTGTAGTTGGCGGAGTACTGGTTATCTTCATGGTATTTGGTATCGTTCAGTGGAGAAGACGTCGACGACAAGTAGGTCCATTAGAAAAAGAGCTAAATGGTTTAGATTTCCAACCTGGGTTATTTTCGTTACGACAAATCAAAGCTGCAACTAACAACTTCGATATTGCCTTTAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTTCAAGGGTGTTCTTTCGGATGGAACAATAGTAGCAGTTAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGCGAGTTTATAAATGAGATTGGCCTTATTTCGGCTTTGCAACACCCTTGTCTAGTTAAGCTCTATGGTTGTTGTATGGAGGGAGATCAGTTGTTGCTGATATATGAATACATGGAAAATAATAGCCTTGCTCGTGCTTTGTTTGCCAAAGAAAAGGTTGAACTGAAATTGGATTGGCAAATGAGGAAGAAAATTTGTGTCGGTATTGCTAGAGGTTTGGCTTACCTTCATGAAGAGTCGAGGCTAAAGATAGTTCATAGAGACATCAAGGCAACAAATGTGTTACTCGATAAAGATCTCAATCCAAAGATATCTGATTTTGGTTTAGCCAAACTTAAAGATGACGGACACACCCACATAACAACTAGAGTAGCAGGCACATATGGATATATGGCTCCAGAATATGCAATGCATGGATATTTGACCGAGAAAGCGGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATTGTTAGTGGGAAGCACAACACCATGAATTGGCCTAAGGATGAATGCTTCTCTCTTGTTGATTGGGTCCATCTCTTGAAGGAAGAAGGTAATATAATGGAACTAGTTGATGAGAGGTTAGGTGAAGAATTCAAAAAAGAGGAAGCAATGATGATGATCAATGTGGCACTTTTATGCACTCATGTTTCTCCAATAAACAGGCCAACCATGTCATCAGTGGTAAACATGCTTGAAGGAAAATCTGTTGTTGAAGAAGTTGTTTCTGACACAAGCCAAGTTTTTGAAGGCAAGAAATTGGAGATGATTCAACAATATTACCAACAAAGTGAAAAAAATGATACACCTCATGATATTGAGACTCAAGAAGAGAGCATAATAATAGATTCAACTGCAGAATATATGTCTGATGGAGATCTACATTCTATCAGCAGAGATTCTCCTTATAGAAGTTCAAATACTTTGTAA 3048 0.3845 MKLIIMNMSFPLLFQILLLVICLISSFASGATLLEEEVQVMKDIGRRLGKKDWDFSKDPCSGQSNWTSSVQVSGFQNAVTCNCSFANATVCHIVSIVLKSQNLFGTLPGEFERLPYLHEIDLTRNYLNGTIPPQWASIKLVNISLYGNRLTGPIPKEFGKITTLQKLDLEFNQLSGQLPPELGNLHQLEILLLNSNNFTGNLPATFAKLTKLKHIRLGDNQFFGTIPDFIQSWTSLERLVMQGSGFCGPVPSGISYLKNLTDLRISDLKGSDFLFPQLSNLTNLETLILRSCNLIGTVPEYLGNITNLRNLDLSFNKLSGQIPNTLGSLENINILYLTGNNFNGPLPNWIARPDYTDLSYNNLSIENPEQLTCQQGTVNLFASSSNGSNLGMVSCLGNNVCPNTLYSLHINCGGKRITSNNSLTYDDDSNEVGPASFHRTESNWALSNNGHFFDSGLADYYTWSNKTNLSMENAELYMDARVSPISLTYYGYCLGNGNYTVNLHFAEIMFTDDQTYNSLGRRIFDIYIQRRLVLKDFDIAEEAGGVGRAIIKKFTAIVTTNTLEIRLNWAGKGTTGIPFGSVYGPLISAISVDPDFTPSVEKGSGIPVWDIVIIVVGGVLVIFMVFGIVQWRRRRRQVGPLEKELNGLDFQPGLFSLRQIKAATNNFDIAFKIGEGGFGPVFKGVLSDGTIVAVKQLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLARALFAKEKVELKLDWQMRKKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLKDDGHTHITTRVAGTYGYMAPEYAMHGYLTEKADVYSFGVVALEIVSGKHNTMNWPKDECFSLVDWVHLLKEEGNIMELVDERLGEEFKKEEAMMMINVALLCTHVSPINRPTMSSVVNMLEGKSVVEEVVSDTSQVFEGKKLEMIQQYYQQSEKNDTPHDIETQEESIIIDSTAEYMSDGDLHSISRDSPYRSSNTL 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02359 1015 ProSiteProfiles Leucine-rich repeat profile. 307 330 IPR001611 GO:0005515
Trre12g02359 1015 CDD STKc_IRAK 673 940 - -
Trre12g02359 1015 SUPERFAMILY Protein kinase-like (PK-like) 649 945 IPR011009 -
Trre12g02359 1015 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 595 - -
Trre12g02359 1015 SMART serkin_6 667 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02359 1015 FunFam Putative LRR receptor-like serine/threonine-protein kinase 743 950 - -
Trre12g02359 1015 SUPERFAMILY L domain-like 87 363 - -
Trre12g02359 1015 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 968 - -
Trre12g02359 1015 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 275 371 - -
Trre12g02359 1015 Gene3D Phosphorylase Kinase; domain 1 634 742 - -
Trre12g02359 1015 Pfam Malectin domain 407 590 IPR021720 -
Trre12g02359 1015 Gene3D Transferase(Phosphotransferase) domain 1 743 955 - -
Trre12g02359 1015 Gene3D - 405 594 - -
Trre12g02359 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Trre12g02359 1015 Pfam Leucine Rich Repeat 307 329 IPR001611 GO:0005515
Trre12g02359 1015 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 34 269 - -
Trre12g02359 1015 Pfam Protein kinase domain 672 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02359 1015 ProSiteProfiles Protein kinase domain profile. 667 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02359 1015 Gene3D Ribonuclease Inhibitor 50 195 IPR032675 -
Trre12g02359 1015 Gene3D Ribonuclease Inhibitor 196 269 IPR032675 -
Trre12g02359 1015 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 636 742 - -
Trre12g02359 1015 Gene3D Ribonuclease Inhibitor 270 396 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02359 Trre-Chr12 27103206 27112019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02359 24 968 Receptor kinase-like Gene Family AT1G53420 53.992 0.0 990
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02359 Pkinase 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02359 - - psat:127081874 1583.93