Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02358 ATGACCACTTCCTCTCAATTTCTCTTCCTTTCACTAACTGTCATTTGGTTCATATCTCTAACAGCTTTTGCTGCTACTACCATTCACCCTGTCGAAAAGAAAGCTCTCGGAGATATAGCTAAATCGCTTGGTAAGAAAGATTGGAATTTTGACATAGATCCGTGCAGCAACAAATCTAACTGGGTTACGCCTCCCATACAAAATATCAATATTAACAATGCCGAAGTGACCAATGAAGTCATATGTAACTGCTCTGTTGCTGGTGACAACTTCTGCCATGTTGTTACAATAAATTTGAATGGGCAAAGCCTCCCCGGCACTCTCCCACCGGAACTGAACAAGTTGCGTTACCTTCAAATTATTGACCTCTCTCGCAATTACTTGACTGGTACAATTCCTAAAGAATGGGGCACAATGACGAATCTTCTTAAAATTTCTCTCCATGGAAATCGATTAACGGGTTCAATACCAGCGGAGATTGCAAAGATATCTACTCTACAAATTTTGGAGGTATGGGTCAATCAAATGTCTGGATATCTTCCTCCTGAGCTTGGGAATCTAACCCAAATTCAAACACTGCGAGTTTCCTCTAACAATTTTACGGGAGAACTACCTGTGACATTGGCAAAGCTCACTACATTGCAAGATTTCCAAATTGACGACAACCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGAGAAGTATCAAAAAACTAATGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCACTTTTGACAAACTTAACTGACTTGAGAATTAGTGATTTGAATGGATCTGAATATGCACCTTTGCCGCAACTCAATAATATGGCATTGTTAAAAAAACTGGTTCTAAGGAATTGCAACATCAACGGAACGCTACCTAAAAATCTCGGGAATATGACAACATTAAAATACTTAGACTTCAGCTTTAACAAATTAAGTGGAACAGTTCCGACGACCTATGCTATTGCTGACACAAAGTTGACATACATATTTTTAACCGGAAACCTTCTCACTGGACAAGTGCCTACTTGGGAAAAGAAGAATGTCAACGTAGATCTTTCATACAATAACTTCAGCATCATCCAAGGGAGTCAAGTATGTCACGATGAAAAAGTGAACTTGTTTTCTACCTCATGGGCACACAATGACATAGGAACAGATTCGTGTTTGAGAGAATGTTCCAAACCCTCATACTCCCTTCATATAAATTGTGGTGGAAATAAAGCAAGAGTCAACAACACAAGCTATGATGATGATTTAGAATCATCTGGATCAGCTAGATTCCTTGCCAGTCACACGGGAAAATGGGCATCTAGCACCACCGGTGCATTCATTGATAGTGATCAACATGGAGATAGTTATATCCGAAAAAACACCTCTACACTTACTATGGTGGATGCTGAATTGTACATGACGGCACGTGTTTCTCCTATTTCTTTGACTTATTTTGCGTTTTGCCTGGAAAATGGAAAATACACAGTAGACCTACACTTTGCTGAAATAATGTTCATAAACGATCAAACTTGTGGTAGTCTTGGAAGGCGTCTATTTGATATCAATCTTCAGGGAAAGCTGGTGCAAAAGGACTTCAATATTGAAGAAGAAGCAGGAGGAGTTGGTAAGAAAGTCGTAAAGCGATTCAAAAAAGTTGTTGTTACTAATAATACATTAGAGATCCGTTTATATTGGGCTGGAAAAGGGAGAGAGGCTCTCCCAGATAAATCAGTGTATGGTCCTCTTATATCAGCTATATCAGCAAAATCTGATTCTGCACCTAGAAGCATGTCTGCAGGAACTGTGGCTGGAAGTGTGGTTGCAGCAACAATTGTCATCATTTTATTATTTGGTATACTTTGGTGGAAAGGGTGTTTTGGAAAGAAAAACTCTTTAGAAAGAGAGCTGAAGAGTTTGGACCTACAAACAGGTATATTTACCTTAAAACAAATCAAAGCAGCAACAAATAACTTCGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTATATAAGGGTTGTTTACCCAATGGGACATTGATAGCAGTCAAGCAACTTTCTTCGAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAAGCATGATTTCTGCTTTACAACACCCTTATCTTGTTAAACTCTATGGTTGTTGTGTTGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTCTTGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATAATATTAGATTGGTCAACAAGGAAGAAGATCTGTGTTGGTATTGCTAGAGGTTTGGCATTCCTTCACGAAGAATCAAGACTCAAGGTTGTTCATAGGGACATCAAGGCCACAAACGTGTTACTTGATACCAAACTTGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGATAATACTCACATTAGCACTAGAATTGCTGGGACATATGGATATATGGCTCCTGAGTATGCAATGCATGGTTATTTGACAGACAAAGCAGATGTTTATAGTTTTGGTGTTGTTGCTCTAGAAATCGTTAGTGGTAAGAGCAACACCCTTTATCGATCAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGAGGCGACATAATGGAACTAGTTGATAAAAGATTAGGTTCAAATTTCAGAAAAAAGGAAGTTACGGTGATGATCAACGTTGCTCTCTTATGCACCAATGCCACTTCAAACCTTAGGCCCTCCATGTCTTCAGTAGTAAGTATGCTTGAAGGAAAGACCATGGTTCCAGAATTTGTTTCAGAATCAAGCGAAGTAATGGATGAAAATAAGGCGGAAGTAATGAGGCAACATTACTATCAGATGGAAGAAAACACGACAAATAAGTCACAAACACAAAGTCAGAGTTTATTAAAGGATGGACCATGGACTGCTTCATCTTCGTCAGCCGCAGACCTTTATCCTATCCACAATGATTCTTCCTATTGGGAGGACAGAAATTAA 3042 0.3895 MTTSSQFLFLSLTVIWFISLTAFAATTIHPVEKKALGDIAKSLGKKDWNFDIDPCSNKSNWVTPPIQNININNAEVTNEVICNCSVAGDNFCHVVTINLNGQSLPGTLPPELNKLRYLQIIDLSRNYLTGTIPKEWGTMTNLLKISLHGNRLTGSIPAEIAKISTLQILEVWVNQMSGYLPPELGNLTQIQTLRVSSNNFTGELPVTLAKLTTLQDFQIDDNQFSGKIPDYIQNWRSIKKLMIQGSGLSGPIPSGISLLTNLTDLRISDLNGSEYAPLPQLNNMALLKKLVLRNCNINGTLPKNLGNMTTLKYLDFSFNKLSGTVPTTYAIADTKLTYIFLTGNLLTGQVPTWEKKNVNVDLSYNNFSIIQGSQVCHDEKVNLFSTSWAHNDIGTDSCLRECSKPSYSLHINCGGNKARVNNTSYDDDLESSGSARFLASHTGKWASSTTGAFIDSDQHGDSYIRKNTSTLTMVDAELYMTARVSPISLTYFAFCLENGKYTVDLHFAEIMFINDQTCGSLGRRLFDINLQGKLVQKDFNIEEEAGGVGKKVVKRFKKVVVTNNTLEIRLYWAGKGREALPDKSVYGPLISAISAKSDSAPRSMSAGTVAGSVVAATIVIILLFGILWWKGCFGKKNSLERELKSLDLQTGIFTLKQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEISMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIILDWSTRKKICVGIARGLAFLHEESRLKVVHRDIKATNVLLDTKLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVSGKSNTLYRSKEEAFYLLDWAHLLKERGDIMELVDKRLGSNFRKKEVTVMINVALLCTNATSNLRPSMSSVVSMLEGKTMVPEFVSESSEVMDENKAEVMRQHYYQMEENTTNKSQTQSQSLLKDGPWTASSSSAADLYPIHNDSSYWEDRN 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02358 1013 Gene3D - 405 597 - -
Trre12g02358 1013 Gene3D Transferase(Phosphotransferase) domain 1 741 953 - -
Trre12g02358 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 205 271 - -
Trre12g02358 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 406 598 - -
Trre12g02358 1013 Gene3D Ribonuclease Inhibitor 274 381 IPR032675 -
Trre12g02358 1013 Gene3D Ribonuclease Inhibitor 31 204 IPR032675 -
Trre12g02358 1013 Gene3D Ribonuclease Inhibitor 205 273 IPR032675 -
Trre12g02358 1013 ProSiteProfiles Protein kinase domain profile. 665 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02358 1013 MobiDBLite consensus disorder prediction 970 1013 - -
Trre12g02358 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Trre12g02358 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase 741 948 - -
Trre12g02358 1013 Pfam Malectin domain 408 593 IPR021720 -
Trre12g02358 1013 SUPERFAMILY Protein kinase-like (PK-like) 648 948 IPR011009 -
Trre12g02358 1013 Pfam Protein kinase domain 667 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02358 1013 SUPERFAMILY L domain-like 82 351 - -
Trre12g02358 1013 CDD STKc_IRAK 671 938 - -
Trre12g02358 1013 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 634 740 - -
Trre12g02358 1013 Gene3D Phosphorylase Kinase; domain 1 633 740 - -
Trre12g02358 1013 MobiDBLite consensus disorder prediction 970 1001 - -
Trre12g02358 1013 SMART serkin_6 665 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02358 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 204 - -
Trre12g02358 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02358 Trre-Chr12 27093907 27101875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02358 20 980 Receptor kinase-like Gene Family AT1G53420 53.306 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02358 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02358 - - gmx:732563 1267.29