Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02357 ATGACCACTTCCTCTCAATTTCTCTTCCTTTCACTAACTGTCATTTGGTTCATATCTCTAACAGCTTTTGCTGCTACTACCATTCACCCTGTCGAAAAGAAAGCTCTCGGAGATATAGCTAAATCGCTTGGTAAGAAAGATTGGAATTTTGACATAGATCCGTGCAGCAACAAATCTAACTGGGTTACGCCTCCCATACAAAATATCAATATTAACAATGCCGAAGTGACCAATGAAGTCATATGTAACTGCTCTGTTGCTGGTGACAACTTCTGCCATGTTGTTACAATAAATTTGAATGGGCAAAGCCTCCCCGGCACTCTCCCACCGGAACTGAACAAGTTGCGTTACCTTCAAATTATTGACCTCTCTCGCAATTACTTGACTGGTACAATTCCTAAAGAATGGGGCACAATGACGAATCTTCTTAAAATTTCTCTCCATGGAAATCGATTAACGGGTTCAATACCAGCGGAGATTGCAAAGATATCTACTCTACAAATTTTGGAGGTATGGGTCAATCAAATGTCTGGATATCTTCCTCCTGAGCTTGGGAATCTAACCCAAATTCAAACACTGCGAGTTTCCTCTAACAATTTTACGGGAGAACTACCTGTGACATTGGCAAAGCTCACTACATTGCAAGATTTCCAAATTGACGACAACCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGAGAAGTATCAAAAAACTAATGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCACTTTTGACAAACTTAACTGACTTGAGAATTAGTGATTTGAATGGATCTGAATATGCACCTTTGCCGCAACTCAATAATATGGCATTGTTAAAAAAACTGGTTCTAAGGAATTGCAACATCAACGGAACGCTACCTAAAAATCTCGGGAATATGACAACATTAAAATACTTAGACTTCAGCTTTAACAAATTAAGTGGAACAGTTCCGACGACCTATGCTATTGCTGACACAAAGTTGACATACATATTTTTAACCGGAAACCTTCTCACTGGACAAGTGCCTACTTGGGAAAAGAAGAATGTCAACGTAGATCTTTCATACAATAACTTCAGCATCATCCAAGGGAGTCAAGTATGTCACGATGAAAAAGTGAACTTGTTTTCTACCTCATGGGCACACAATGACATAGGAACAGATTCGTGTTTGAGAGAATGTTCCAAACGTGAGTTTCTTCGTGCCTCATACTCCCTTCATATAAATTGTGGTGGAAATAAAGCAAGAGTCAACAACACAAGCTATGATGATGATTTAGAATCATCTGGATCAGCTAGATTCCTTGCCAGTCACACGGGAAAATGGGCATCTAGCACCACCGGTGCATTCATTGATAGTGATCAACATGGAGATAGTTATATCCGAAAAAACACCTCTACACTTACTATGGTGGATGCTGAATTGTACATGACGGCACGTGTTTCTCCTATTTCTTTGACTTATTTTGCGTTTTGCCTGGAAAATGGAAAATACACAGTAGACCTACACTTTGCTGAAATAATGTTCATAAACGATCAAACTTGTGGTAGTCTTGGAAGGCGTCTATTTGATATCAATCTTCAGGGAAAGCTGGTGCAAAAGGACTTCAATATTGAAGAAGAAGCAGGAGGAGTTGGTAAGAAAGTCGTAAAGCGATTCAAAAAAGTTGTTGTTACTAATAATACATTAGAGATCCGTTTATATTGGGCTGGAAAAGGGAGAGAGGCTCTCCCAGATAAATCAGTGTATGGTCCTCTTATATCAGCTATATCAGCAAAATCTGATTCTGCACCTAGAAGCATGTCTGCAGGAACTGTGGCTGGAAGTGTGGTTGCAGCAACAATTGTCATCATTTTATTATTTGGTATACTTTGGTGGAAAGGGTGTTTTGGAAAGAAAAACTCTTTAGAAAGAGAGCTGAAGAGTTTGGACCTACAAACAGGTATATTTACCTTAAAACAAATCAAAGCAGCAACAAATAACTTCGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTATATAAGGGTTGTTTACCCAATGGGACATTGATAGCAGTCAAGCAACTTTCTTCGAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAAGCATGATTTCTGCTTTACAACACCCTTATCTTGTTAAACTCTATGGTTGTTGTGTTGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTCTTGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATAATATTAGATTGGTCAACAAGGAAGAAGATCTGTGTTGGTATTGCTAGAGGTTTGGCATTCCTTCACGAAGAATCAAGACTCAAGGTTGTTCATAGGGACATCAAGGCCACAAACGTGTTACTTGATACCAAACTTGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGATAATACTCACATTAGCACTAGAATTGCTGGGACATATGGATATATGGCTCCTGAGTATGCAATGCATGGTTATTTGACAGACAAAGCAGATGTTTATAGTTTTGGTGTTGTTGCTCTAGAAATCGTTAGTGGTAAGAGCAACACCCTTTATCGATCAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGAGGCGACATAATGGAACTAGTTGATAAAAGATTAGGTTCAAATTTCAGAAAAAAGGAAGTTACGGTGATGATCAACGTTGCTCTCTTATGCACCAATGCCACTTCAAACCTTAGGCCCTCCATGTCTTCAGTAGTAAGTATGCTTGAAGGAAAGACCATGGTTCCAGAATTTGTTTCAGAATCAAGCGAAGTAATGGATGAAAATAAGGCGGAAGTAATGAGGCAACATTACTATCAGATGGAAGAAAACACGACAAATAAGTCACAAACACAAAGTCAGAGTTTATTAAAGGATGGACCATGGACTGCTTCATCTTCGTCAGCCGCAGACCTTTATCCTATCCACAATGATTCTTCCTATTGGGAGGACAGAAATTAA 3057 0.3899 MTTSSQFLFLSLTVIWFISLTAFAATTIHPVEKKALGDIAKSLGKKDWNFDIDPCSNKSNWVTPPIQNININNAEVTNEVICNCSVAGDNFCHVVTINLNGQSLPGTLPPELNKLRYLQIIDLSRNYLTGTIPKEWGTMTNLLKISLHGNRLTGSIPAEIAKISTLQILEVWVNQMSGYLPPELGNLTQIQTLRVSSNNFTGELPVTLAKLTTLQDFQIDDNQFSGKIPDYIQNWRSIKKLMIQGSGLSGPIPSGISLLTNLTDLRISDLNGSEYAPLPQLNNMALLKKLVLRNCNINGTLPKNLGNMTTLKYLDFSFNKLSGTVPTTYAIADTKLTYIFLTGNLLTGQVPTWEKKNVNVDLSYNNFSIIQGSQVCHDEKVNLFSTSWAHNDIGTDSCLRECSKREFLRASYSLHINCGGNKARVNNTSYDDDLESSGSARFLASHTGKWASSTTGAFIDSDQHGDSYIRKNTSTLTMVDAELYMTARVSPISLTYFAFCLENGKYTVDLHFAEIMFINDQTCGSLGRRLFDINLQGKLVQKDFNIEEEAGGVGKKVVKRFKKVVVTNNTLEIRLYWAGKGREALPDKSVYGPLISAISAKSDSAPRSMSAGTVAGSVVAATIVIILLFGILWWKGCFGKKNSLERELKSLDLQTGIFTLKQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEISMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIILDWSTRKKICVGIARGLAFLHEESRLKVVHRDIKATNVLLDTKLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVSGKSNTLYRSKEEAFYLLDWAHLLKERGDIMELVDKRLGSNFRKKEVTVMINVALLCTNATSNLRPSMSSVVSMLEGKTMVPEFVSESSEVMDENKAEVMRQHYYQMEENTTNKSQTQSQSLLKDGPWTASSSSAADLYPIHNDSSYWEDRN 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02357 1018 CDD STKc_IRAK 676 943 - -
Trre12g02357 1018 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 411 603 - -
Trre12g02357 1018 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 205 271 - -
Trre12g02357 1018 Gene3D - 412 602 - -
Trre12g02357 1018 MobiDBLite consensus disorder prediction 975 1006 - -
Trre12g02357 1018 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 639 745 - -
Trre12g02357 1018 SUPERFAMILY L domain-like 82 351 - -
Trre12g02357 1018 FunFam Putative LRR receptor-like serine/threonine-protein kinase 746 953 - -
Trre12g02357 1018 Pfam Protein kinase domain 672 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02357 1018 Gene3D Ribonuclease Inhibitor 205 281 IPR032675 -
Trre12g02357 1018 Gene3D Ribonuclease Inhibitor 31 204 IPR032675 -
Trre12g02357 1018 SUPERFAMILY Protein kinase-like (PK-like) 653 953 IPR011009 -
Trre12g02357 1018 Gene3D Transferase(Phosphotransferase) domain 1 746 958 - -
Trre12g02357 1018 Gene3D Ribonuclease Inhibitor 282 411 IPR032675 -
Trre12g02357 1018 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 980 - -
Trre12g02357 1018 MobiDBLite consensus disorder prediction 975 1018 - -
Trre12g02357 1018 SMART serkin_6 670 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02357 1018 Pfam Malectin domain 413 598 IPR021720 -
Trre12g02357 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Trre12g02357 1018 Gene3D Phosphorylase Kinase; domain 1 638 745 - -
Trre12g02357 1018 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 204 - -
Trre12g02357 1018 ProSiteProfiles Protein kinase domain profile. 670 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02357 Trre-Chr12 27093907 27101875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02357 20 985 Receptor kinase-like Gene Family AT1G53420 53.036 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02357 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02357 - - gmx:732563 1264.98