Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02356 ATGACCACTTCATCTCAATTTTTCTTTCTTTCACTCATTGTCATTTGGTTCATATCTCTAACAGCTTTTGCTGCTACTACTATTCACCCCGACGAAAAGAATGCTCTCAAAGCTATTGCTAATTCACTTGGCAAGAAGGATTGGAACTTCAACATAGATCCATGCAGCAACAAATCTAACTGGGTTATGCCTATGGCTGAGACTCCCAGTTTGAGAATCATAGTGAGCATTGTTTCCTGTAACTGTTTTGTTCCCGGTGACAACTTCTGCCATGTTGTTTCAATAACTTTGAAAGGGCAAAATCTCCCCGGCACTCTCCCACCAGAACTGACCAGGTTGCGTTACCTTCAAACTATTGCTCTCAGCGGAAATCGATTAACAGGTCCAATACCAGTGGAGATTGCAAACATATCTACTCTCCAATTCTTGGATTTAACAGGCAATCAAATGTCTGGAAATATTACTCCTGAGCTTGGGAATCTATCCCAGATTCAAACACTGCGAATTTCCTCCAACAATTTTAGTGGAGAACTACCTGTGACATTGGCCAAGCTTACTACATTGCAAGATTTCCGAATTGAGGGCAACCAATTCTTTGGAAAGATACCTGATTATATTCAGAACTGGTCACGTATCAAAACACTAGTGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCACTTTTGACAAACTTAATTGACTTGAGAATTAGTGATTTAGATGGATCTGAAGATGCACCTTTGCCACAACTTAATAATATGACATTGTTACAAACTCTGATTCTGAGGAACTGCAATATCAGTGGAACACTGCATGATTATCTTGGGACTATGAAATTCTTAAAAATCTTAGACCTCAGCTTTAACAAATTAAGTGGAACAGTTCCGAGTACCTATGCCGACATGAACAGTTCACAATACATATTTTTAACTGGAAACCTTCTCACTGGCCACATGCCTGCTTGGAAAACAGACGTTCACATAGATCTTTCATACAATAATTTCAGCATCAGCCAAGGGAGTAGTCAGATATGTCAAGAAGAAAATGTGAACTTATTTTCTCCCTCGTGGGCACGCAATGACATAGGAACAGTTCCGTGCTTGAGGTTTGAATGTCCCAAACGTGAGTTTCTTCATGCCTCATACTCCCTTTATATTAATTGTGGTGGACAGCAAACCATGGTCAACAAAACAAGTTATTATGGTGATCCAGATATACCTGGACCGGCTAGATTCCATCACAGTCCAAAAGGAAATTGGGCATTTAGCACCACTGGTATATTCATGGAAAGCAATCAATTTCCAGTAAATTATCGGCCGCAAATTGTCACAAAACTTACTATGGTGGATACTGATTTGTACATGAACGCAAGTGTTTCTCCTATTTCTTTGACTTATTACGGATTTTGCCTGGCAAATGGAAGCTACACAGTGAATCTACATTTTGCGGAAATAATGTTTACAGACGATCAAACTTATGGTAGTCTTGGAAGGCGTGTATTTGATATCTACCTTCAGGGAATGCTAATGAAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAGTCATAAAGCAGTTCAAAGGTGTTGTTGTTACTAGTAATACAATGGAGATCCGCTTATATTGGGCTGGAAAAGGGACACAGGCTCTCCCAAATAAATCAGTATATGGTCCTCTTATATCGGCTATATCAGTGGAATCTGATTCTCCACCGGGAAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCGGCAGTAATTATTATCATTCTATTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACTCATTAGCAAGAGAGCTGCAGAGTTTAGACCTACAAACAGGTTTATATACCTTAAGACAAATCAAAGCAGCAACAAACAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTTTATCCAACGGGACATTGATTGCAGTTAAGCAACTTTCTTCTAAATCAAGGCAAGGGAACCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTACAACACCCGTATCTTGTTAAACTATATGGCTGTTGTGTCGAGGGAGATCAATTGTTGTTGATATATGAATACTTGGAAAACAATAGCCTTGCCCGTGCTTTATTTGGTCCAGAGGAAGAACAGATCAAATTAGATTGGTTACTAAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTGACATTCCTTCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTGTTGCTCGATAAAGATCTTGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGCACTAAAATTGCGGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGAAGGAGCAACACCCTTTATCGGACAAAGGAAGAAGCATTCTATCTACTTGATTGGGCACATTCGTTGAAAGAAAGTGGTGACCTAATGGAACTCGTTGATACAAGATTAGGTTCAGATTTCAATAAACAAGAAGCTCTGGTGATGATCAATGTGGCTCTTCTTTGCACCAATGTCACTTCAAACCTTCGGCCCTCTATGTCGTCAGTGGTAAGTATGCTTGAAGGAAAGGCCGTGGTTCCGGAATTTGTTCCAGATTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGTGATGAGGCAGTATTACTACCAGATTGACGAAAATAATATAAGTAAGCCACTAACACAAAGTCGGAGTTTATTAAGTGATGGGCCATGGACTGCTACATCTTCATCAGGTGTAGACCTTTATCCTATCCACAGTGATTCTTCCTATTGGGGGGAAAGAAGTTAA 2979 0.3971 MTTSSQFFFLSLIVIWFISLTAFAATTIHPDEKNALKAIANSLGKKDWNFNIDPCSNKSNWVMPMAETPSLRIIVSIVSCNCFVPGDNFCHVVSITLKGQNLPGTLPPELTRLRYLQTIALSGNRLTGPIPVEIANISTLQFLDLTGNQMSGNITPELGNLSQIQTLRISSNNFSGELPVTLAKLTTLQDFRIEGNQFFGKIPDYIQNWSRIKTLVIQGSGLSGPIPSGISLLTNLIDLRISDLDGSEDAPLPQLNNMTLLQTLILRNCNISGTLHDYLGTMKFLKILDLSFNKLSGTVPSTYADMNSSQYIFLTGNLLTGHMPAWKTDVHIDLSYNNFSISQGSSQICQEENVNLFSPSWARNDIGTVPCLRFECPKREFLHASYSLYINCGGQQTMVNKTSYYGDPDIPGPARFHHSPKGNWAFSTTGIFMESNQFPVNYRPQIVTKLTMVDTDLYMNASVSPISLTYYGFCLANGSYTVNLHFAEIMFTDDQTYGSLGRRVFDIYLQGMLMKKDFNIAEEAGGVGKKVIKQFKGVVVTSNTMEIRLYWAGKGTQALPNKSVYGPLISAISVESDSPPGSISAGAVVGIVVAAVIIIILLFGILWWKGCFGKKNSLARELQSLDLQTGLYTLRQIKAATNNFDISNKIGEGGFGPVYKGCLSNGTLIAVKQLSSKSRQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEEQIKLDWLLRQKICVGIARGLTFLHEESRLKVVHRDIKATNVLLDKDLDPKISDFGLAKLDEEDNTHISTKIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTLYRTKEEAFYLLDWAHSLKESGDLMELVDTRLGSDFNKQEALVMINVALLCTNVTSNLRPSMSSVVSMLEGKAVVPEFVPDSSEVMDEKKMEVMRQYYYQIDENNISKPLTQSRSLLSDGPWTATSSSGVDLYPIHSDSSYWGERS 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02356 992 SUPERFAMILY L domain-like 55 338 - -
Trre12g02356 992 SMART serkin_6 644 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02356 992 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 180 245 - -
Trre12g02356 992 CDD STKc_IRAK 650 917 - -
Trre12g02356 992 Gene3D Ribonuclease Inhibitor 249 371 IPR032675 -
Trre12g02356 992 Gene3D Ribonuclease Inhibitor 31 155 IPR032675 -
Trre12g02356 992 Gene3D Ribonuclease Inhibitor 156 248 IPR032675 -
Trre12g02356 992 Pfam Protein tyrosine and serine/threonine kinase 646 914 IPR001245 GO:0004672|GO:0006468
Trre12g02356 992 Gene3D Transferase(Phosphotransferase) domain 1 720 925 - -
Trre12g02356 992 Pfam Malectin domain 387 572 IPR021720 -
Trre12g02356 992 FunFam Putative LRR receptor-like serine/threonine-protein kinase 720 927 - -
Trre12g02356 992 SUPERFAMILY Protein kinase-like (PK-like) 628 931 IPR011009 -
Trre12g02356 992 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 385 577 - -
Trre12g02356 992 Gene3D - 383 577 - -
Trre12g02356 992 Gene3D Phosphorylase Kinase; domain 1 612 719 - -
Trre12g02356 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672|GO:0006468
Trre12g02356 992 ProSiteProfiles Protein kinase domain profile. 644 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02356 992 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 613 719 - -
Trre12g02356 992 FunFam Leucine-rich repeat receptor protein kinase EMS1 87 179 - -
Trre12g02356 992 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02356 Trre-Chr12 27079825 27090345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02356 20 949 Receptor kinase-like Gene Family AT1G53420 51.346 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02356 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02356 - - gmx:732563 1222.61