Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02355 ATGACCACTTCATCTCAATTTTTCTTTCTTTCACTCATTGTCATTTGGTTCATATCTCTAACAGCTTTTGCTGCTACTACTATTCACCCCGACGAAAAGAATGCTCTCAAAGCTATTGCTAATTCACTTGGCAAGAAGGATTGGAACTTCAACATAGATCCATGCAGCAACAAATCTAACTGGGTTATGCCTATGGCTGAGACTCCCAGTTTGAGAATCATAGTGAGCATTGTTTCCTGTAACTGTTTTGTTCCCGGTGACAACTTCTGCCATGTTGTTTCAATAACTTTGAAAGGGCAAAATCTCCCCGGCACTCTCCCACCAGAACTGACCAGGTTGCGTTACCTTCAAACTATTGACCTCTCTCGCAATTACTTGAATGGTACAATTCCGAAACAATGGGGATCCATGATGAATATTAGTAGAATTGCTCTCAGCGGAAATCGATTAACAGGTCCAATACCAGTGGAGATTGCAAACATATCTACTCTCCAATTCTTGGATTTAACAGGCAATCAAATGTCTGGAAATATTACTCCTGAGCTTGGGAATCTATCCCAGATTCAAACACTGCGAATTTCCTCCAACAATTTTAGTGGAGAACTACCTGTGACATTGGCCAAGCTTACTACATTGCAAGATTTCCGAATTGAGGGCAACCAATTCTTTGGAAAGATACCTGATTATATTCAGAACTGGTCACGTATCAAAACACTAGTGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCACTTTTGACAAACTTAATTGACTTGAGAATTAGTGATTTAGATGGATCTGAAGATGCACCTTTGCCACAACTTAATAATATGACATTGTTACAAACTCTGATTCTGAGGAACTGCAATATCAGTGGAACACTGCATGATTATCTTGGGACTATGAAATTCTTAAAAATCTTAGACCTCAGCTTTAACAAATTAAGTGGAACAGTTCCGAGTACCTATGCCGACATGAACAGTTCACAATACATATTTTTAACTGGAAACCTTCTCACTGGCCACATGCCTGCTTGGAAAACAGACGTTCACATAGATCTTTCATACAATAATTTCAGCATCAGCCAAGGGAGTAGTCAGATATGTCAAGAAGAAAATGTGAACTTATTTTCTCCCTCGTGGGCACGCAATGACATAGGAACAGTTCCGTGCTTGAGGTTTGAATGTCCCAAACCCTCATACTCCCTTTATATTAATTGTGGTGGACAGCAAACCATGGTCAACAAAACAAGTTATTATGGTGATCCAGATATACCTGGACCGGCTAGATTCCATCACAGTCCAAAAGGAAATTGGGCATTTAGCACCACTGGTATATTCATGGAAAGCAATCAATTTCCAGTAAATTATCGGCCGCAAATTGTCACAAAACTTACTATGGTGGATACTGATTTGTACATGAACGCAAGTGTTTCTCCTATTTCTTTGACTTATTACGGATTTTGCCTGGCAAATGGAAGCTACACAGTGAATCTACATTTTGCGGAAATAATGTTTACAGACGATCAAACTTATGGTAGTCTTGGAAGGCGTGTATTTGATATCTACCTTCAGGGAATGCTAATGAAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAGTCATAAAGCAGTTCAAAGGTGTTGTTGTTACTAGTAATACAATGGAGATCCGCTTATATTGGGCTGGAAAAGGGACACAGGCTCTCCCAAATAAATCAGTATATGGTCCTCTTATATCGGCTATATCAGTGGAATCTGATTCTCCACCGGGAAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCGGCAGTAATTATTATCATTCTATTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACTCATTAGCAAGAGAGCTGCAGAGTTTAGACCTACAAACAGGTTTATATACCTTAAGACAAATCAAAGCAGCAACAAACAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTTTATCCAACGGGACATTGATTGCAGTTAAGCAACTTTCTTCTAAATCAAGGCAAGGGAACCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTACAACACCCGTATCTTGTTAAACTATATGGCTGTTGTGTCGAGGGAGATCAATTGTTGTTGATATATGAATACTTGGAAAACAATAGCCTTGCCCGTGCTTTATTTGGTCCAGAGGAAGAACAGATCAAATTAGATTGGTTACTAAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTGACATTCCTTCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTGTTGCTCGATAAAGATCTTGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGCACTAAAATTGCGGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGAAGGAGCAACACCCTTTATCGGACAAAGGAAGAAGCATTCTATCTACTTGATTGGGCACATTCGTTGAAAGAAAGTGGTGACCTAATGGAACTCGTTGATACAAGATTAGGTTCAGATTTCAATAAACAAGAAGCTCTGGTGATGATCAATGTGGCTCTTCTTTGCACCAATGTCACTTCAAACCTTCGGCCCTCTATGTCGTCAGTGGTAAGTATGCTTGAAGGAAAGGCCGTGGTTCCGGAATTTGTTCCAGATTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGTGATGAGGCAGTATTACTACCAGATTGACGAAAATAATATAAGTAAGCCACTAACACAAAGTCGGAGTTTATTAAGTGATGGGCCATGGACTGCTACATCTTCATCAGGTGTAGACCTTTATCCTATCCACAGTGATTCTTCCTATTGGGGGGAAAGAAGTTAA 3036 0.3966 MTTSSQFFFLSLIVIWFISLTAFAATTIHPDEKNALKAIANSLGKKDWNFNIDPCSNKSNWVMPMAETPSLRIIVSIVSCNCFVPGDNFCHVVSITLKGQNLPGTLPPELTRLRYLQTIDLSRNYLNGTIPKQWGSMMNISRIALSGNRLTGPIPVEIANISTLQFLDLTGNQMSGNITPELGNLSQIQTLRISSNNFSGELPVTLAKLTTLQDFRIEGNQFFGKIPDYIQNWSRIKTLVIQGSGLSGPIPSGISLLTNLIDLRISDLDGSEDAPLPQLNNMTLLQTLILRNCNISGTLHDYLGTMKFLKILDLSFNKLSGTVPSTYADMNSSQYIFLTGNLLTGHMPAWKTDVHIDLSYNNFSISQGSSQICQEENVNLFSPSWARNDIGTVPCLRFECPKPSYSLYINCGGQQTMVNKTSYYGDPDIPGPARFHHSPKGNWAFSTTGIFMESNQFPVNYRPQIVTKLTMVDTDLYMNASVSPISLTYYGFCLANGSYTVNLHFAEIMFTDDQTYGSLGRRVFDIYLQGMLMKKDFNIAEEAGGVGKKVIKQFKGVVVTSNTMEIRLYWAGKGTQALPNKSVYGPLISAISVESDSPPGSISAGAVVGIVVAAVIIIILLFGILWWKGCFGKKNSLARELQSLDLQTGLYTLRQIKAATNNFDISNKIGEGGFGPVYKGCLSNGTLIAVKQLSSKSRQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEEQIKLDWLLRQKICVGIARGLTFLHEESRLKVVHRDIKATNVLLDKDLDPKISDFGLAKLDEEDNTHISTKIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTLYRTKEEAFYLLDWAHSLKESGDLMELVDTRLGSDFNKQEALVMINVALLCTNVTSNLRPSMSSVVSMLEGKAVVPEFVPDSSEVMDEKKMEVMRQYYYQIDENNISKPLTQSRSLLSDGPWTATSSSGVDLYPIHSDSSYWGERS 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02355 1011 Gene3D - 404 596 - -
Trre12g02355 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Trre12g02355 1011 CDD STKc_IRAK 669 936 - -
Trre12g02355 1011 ProSiteProfiles Protein kinase domain profile. 663 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02355 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 596 - -
Trre12g02355 1011 Gene3D Transferase(Phosphotransferase) domain 1 739 944 - -
Trre12g02355 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 203 269 - -
Trre12g02355 1011 SUPERFAMILY Protein kinase-like (PK-like) 647 950 IPR011009 -
Trre12g02355 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase 739 946 - -
Trre12g02355 1011 Gene3D Ribonuclease Inhibitor 31 202 IPR032675 -
Trre12g02355 1011 Gene3D Ribonuclease Inhibitor 203 275 IPR032675 -
Trre12g02355 1011 Pfam Protein tyrosine and serine/threonine kinase 665 933 IPR001245 GO:0004672|GO:0006468
Trre12g02355 1011 Gene3D Phosphorylase Kinase; domain 1 631 738 - -
Trre12g02355 1011 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 961 - -
Trre12g02355 1011 SMART serkin_6 663 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02355 1011 Gene3D Ribonuclease Inhibitor 276 386 IPR032675 -
Trre12g02355 1011 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 202 - -
Trre12g02355 1011 SUPERFAMILY L domain-like 55 349 - -
Trre12g02355 1011 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
Trre12g02355 1011 Pfam Malectin domain 406 591 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02355 Trre-Chr12 27079825 27090345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02355 20 968 Receptor kinase-like Gene Family AT1G53420 52.911 0.0 978
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02355 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02355 - - gmx:732563 1271.53