LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g02354	ATGAATTTCTCTCTAATACTACATATTTTGCTTCTTGCCTTTTCTTTGATTTCTTCATTTACTGGTGGAGCTACTCTGTCACAAGAAGAAGTACAAGTTATGAAAGACATAGGAAGGACACTTGGGAAGAAGGATTGGGATTTCAGCGTAGATCCATGCAGTGGACAAAGTAACTGGAACACATCTTCTGTGCAAGTGAAAGGGTTTGAAAATGCTGTCACTTGCAATTGCTCTTTTGCAAATGCCACTGTCTGCCATATTGTTAGCATTGTTCTGAAGTCACAAAATCTTTCGGGCACACTTCCAACAGAACTTGTGAAATTGCCTTACCTCCAACAAATTAATCTCAAAAACAACTACCTTAATGGTACAATTCCACCACAATGGGGTTCCATGATCAATCTTATCGACATTGAACTATTAGGAAATCGATTAACAGGTCCAATCCCAAAAGAGCTTGGAAATATCACCACCCTGAAAATATTGATCCTGAAGTTCAATCAATTATCTGGAGAGCTTCCTCCAGAGCTTGGGAATCTTCACCAGCTTGAAAGACTGCTTCTTTCCTCGAACTATTTTACTGGAAATATACCTGCAACATATGCTAAGCTCACTAAACTGAAGCAAATTCGACTTTGCGATAATCAATTCTCTGGACCTATACCTGATTTCATTCAGAGCTGGACAAGTCTTTGGAGGATGGTGATGCAAGGGAGTGGTTTGGGTGGCCCAATTCCTTCTGGAATTTCATATCTAAAAAACCTCACTGATTTGAGAGTAACTGACTTGAAAGGACCGGATTCTTCTTTTCCGCAACTAATTAACTTGACTGTTCTGGATACATTAGTACTGAGGAGTTGCAATCTTATAGGAACAGTTCCTGAATATCTTGGAAATATTACCACATTAAGATCGTTAGACCTCAGTTTTAACAAATTAAGTGGACAGATACCGAACACTTTGGGCATCCTTGAGAACATAAATCTACTATACTTAACTGGAAACCTTTTTAATGGACCACTTCCAAAGTGGATAGCTAGACCAGACTACACAGATCTATCATATAACAACTTGAGCATTGAAAATCCTGAGCAGTTGACATGTCAACAGGGAACAGTGAACTTATTTTCATCATCTTCAAAGGAAAGTAACTTAGGAATGGTTTCATGTTTGAGGAACAATGAATGTCCTAAAAATTCATACTCTCTCCATATCAATTGTGGTGGAAAGCTCATAACTTCTAATAAAAGCCTGACATATGTAAATGATTCATATGAAATTGGACCGGCAAGCTTTCACCGGAGTGGTTCCAATTGGGCTCTTAGCAACACTGGTCACTTTTTTGATAGTAGCCTTGTAGACTACTATACCTGGTCTAATCAAACTAATCTTGCCATGGAAAATTCCGAACTGTATATGGATGCACGTGTTTCTCCTCTTTCTTTAACATATTATGGATTTTGCCTGGGAAATGGAAACTATACAGTAAATCTCCATTTTGCGGAGATAATGTTTACAGATGATCAAACATATAACAGCCTTGGAAGGCGTATATTTGACATCTATATTCAGGGAAGGATGGTAATGAAGGATTTCAATATCGCAAAAGAAGCCGGTGGAGTGGGTAAGGCAATCATAAAGAAGTTCACTGCTATTGTGACTAGTAATACGTTGGAGATTCGCCTTCATTGGGCTGGGAAAGGCACATCTGGTATCCCATTTGATTCAGTATACGGTCCTCTTATATCGGCTATATCGGTTGATCCTGACTTTACACCCCCAGTGGAAAAAGGAAGTAGCATACCTGTGCGTAATATTGTGGCAATAGTAGTTTCTGCAGCCCTAGTTATCTTATTTGTATTTGGCATAGCTTGCTGGAGAATATGTCGACGACATATAGGTCCATTGGAAAGAGAGATGAAGAGTTTAGACCTTCAAACGGGTTTATTTACATTGAGACAAATCAAAGAAGCAACAAACAACTTTGATATTTCAAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTTTGTCCAATGGGACATTGATAGCAGTCAAACAACTTTCTTCTAAGTCAAAGCAAGGGAATCAATCAAGACTGAAGGTTGTTCATAGGGACATCAAATCCACTAATGTGTTACTTGATACGGATCTCGGCCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGCACTAGAATTGCCGGTACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGAAGGAGCAACACCTTTTATCGGACAAAGGAAGAAGCATTCTATCTTCTTGATTGGGCACATATGTTGAAAGAGAGAGGTGACCTAATGGAGCTAGTTGATAGCAGATTCGGTTCAGATTTCAAGAAAAAGGAAGTTATGGTGATGATCGATGTGGCTCTCCTATGCACCAATGTCACTTCGAACCTTAGGCCCTCTATGTCGTCAGTAGTAAGTATGCTTGAAGGAAGGACTGTAGTTCCAGAATTTGTGCCAGATTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGTAATGAGGCAGCATTACTATCAGACGGATAAAACAAGCAAGTCACAATCACAGAGTCGACGTTTATTGAATGATGGACCATGTACTGCTACAACTTCATCAGTTGACCTTTATTCTGTCCACCTTGATTCTTCCTATTTGGAGGAAAGAAATTAA	2790	0.3914	MNFSLILHILLLAFSLISSFTGGATLSQEEVQVMKDIGRTLGKKDWDFSVDPCSGQSNWNTSSVQVKGFENAVTCNCSFANATVCHIVSIVLKSQNLSGTLPTELVKLPYLQQINLKNNYLNGTIPPQWGSMINLIDIELLGNRLTGPIPKELGNITTLKILILKFNQLSGELPPELGNLHQLERLLLSSNYFTGNIPATYAKLTKLKQIRLCDNQFSGPIPDFIQSWTSLWRMVMQGSGLGGPIPSGISYLKNLTDLRVTDLKGPDSSFPQLINLTVLDTLVLRSCNLIGTVPEYLGNITTLRSLDLSFNKLSGQIPNTLGILENINLLYLTGNLFNGPLPKWIARPDYTDLSYNNLSIENPEQLTCQQGTVNLFSSSSKESNLGMVSCLRNNECPKNSYSLHINCGGKLITSNKSLTYVNDSYEIGPASFHRSGSNWALSNTGHFFDSSLVDYYTWSNQTNLAMENSELYMDARVSPLSLTYYGFCLGNGNYTVNLHFAEIMFTDDQTYNSLGRRIFDIYIQGRMVMKDFNIAKEAGGVGKAIIKKFTAIVTSNTLEIRLHWAGKGTSGIPFDSVYGPLISAISVDPDFTPPVEKGSSIPVRNIVAIVVSAALVILFVFGIACWRICRRHIGPLEREMKSLDLQTGLFTLRQIKEATNNFDISNKIGEGGFGPVYKGCLSNGTLIAVKQLSSKSKQGNQSRLKVVHRDIKSTNVLLDTDLGPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTFYRTKEEAFYLLDWAHMLKERGDLMELVDSRFGSDFKKKEVMVMIDVALLCTNVTSNLRPSMSSVVSMLEGRTVVPEFVPDSSEVMDEKKMEVMRQHYYQTDKTSKSQSQSRRLLNDGPCTATTSSVDLYSVHLDSSYLEERN	929

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g02354	929	MobiDBLite	consensus disorder prediction	885	904	-	-
	Trre12g02354	929	Gene3D	Ribonuclease Inhibitor	262	380	IPR032675	-
	Trre12g02354	929	Gene3D	Ribonuclease Inhibitor	43	199	IPR032675	-
	Trre12g02354	929	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g29720	698	859	-	-
	Trre12g02354	929	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	706	718	IPR008271	GO:0004672\|GO:0006468
	Trre12g02354	929	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	14	701	-	-
	Trre12g02354	929	SUPERFAMILY	Protein kinase-like (PK-like)	645	872	IPR011009	-
	Trre12g02354	929	SMART	serkin_6	662	855	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g02354	929	Gene3D	Transferase(Phosphotransferase) domain 1	683	865	-	-
	Trre12g02354	929	SUPERFAMILY	L domain-like	81	358	-	-
	Trre12g02354	929	Pfam	Malectin domain	402	585	IPR021720	-
	Trre12g02354	929	FunFam	Putative LRR receptor-like serine/threonine-protein kinase isoform A	197	264	-	-
	Trre12g02354	929	MobiDBLite	consensus disorder prediction	886	904	-	-
	Trre12g02354	929	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	400	590	-	-
	Trre12g02354	929	Gene3D	-	398	589	-	-
	Trre12g02354	929	ProSiteProfiles	Protein kinase domain profile.	559	865	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g02354	929	Gene3D	Ribonuclease Inhibitor	200	261	IPR032675	-
	Trre12g02354	929	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A	30	191	-	-
	Trre12g02354	929	Pfam	Protein kinase domain	705	852	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g02354	Trre-Chr12	27066045	27074232	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g02354	701	897	Receptor kinase-like Gene Family	AT1G53420	60.000	9.82e-68	242

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre12g02354		Malectin	1.7e-43	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g02354	-		-	gmx:100786496	1049.65