Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02353 ATGAAGCACATCATCATAAACATGAATTTCTCTCTAATACTACATATTTTGCTTCTTGCCTTTTCTTTGATTTCTTCATTTACTGGTGGAGCTACTCTGTCACAAGAAGAAGTACAAGTTATGAAAGACATAGGAAGGACACTTGGGAAGAAGGATTGGGATTTCAGCGTAGATCCATGCAGTGGACAAAGTAACTGGAACACATCTTCTGTGCAAGTGAAAGGGTTTGAAAATGCTGTCACTTGCAATTGCTCTTTTGCAAATGCCACTGTCTGCCATATTGTTAGCATTGTTCTGAAGTCACAAAATCTTTCGGGCACACTTCCAACAGAACTTGTGAAATTGCCTTACCTCCAACAAATTAATCTCAAAAACAACTACCTTAATGGTACAATTCCACCACAATGGGGTTCCATGATCAATCTTATCGACATTGAACTATTAGGAAATCGATTAACAGGTCCAATCCCAAAAGAGCTTGGAAATATCACCACCCTGAAAATATTGATCCTGAAGTTCAATCAATTATCTGGAGAGCTTCCTCCAGAGCTTGGGAATCTTCACCAGCTTGAAAGACTGCTTCTTTCCTCGAACTATTTTACTGGAAATATACCTGCAACATATGCTAAGCTCACTAAACTGAAGCAAATTCGACTTTGCGATAATCAATTCTCTGGACCTATACCTGATTTCATTCAGAGCTGGACAAGTCTTTGGAGGATGGTGATGCAAGGGAGTGGTTTGGGTGGCCCAATTCCTTCTGGAATTTCATATCTAAAAAACCTCACTGATTTGAGAGTAACTGACTTGAAAGGACCGGATTCTTCTTTTCCGCAACTAATTAACTTGACTGTTCTGGATACATTAGTACTGAGGAGTTGCAATCTTATAGGAACAGTTCCTGAATATCTTGGAAATATTACCACATTAAGATCGTTAGACCTCAGTTTTAACAAATTAAGTGGACAGATACCGAACACTTTGGGCATCCTTGAGAACATAAATCTACTATACTTAACTGGAAACCTTTTTAATGGACCACTTCCAAAGTGGATAGCTAGACCAGACTACACAGATCTATCATATAACAACTTGAGCATTGAAAATCCTGAGCAGTTGACATGTCAACAGGGAACAGTGAACTTATTTTCATCATCTTCAAAGGAAAGTAACTTAGGAATGGTTTCATGTTTGAGGAACAATGAATGTCCTAAAAATTCATACTCTCTCCATATCAATTGTGGTGGAAAGCTCATAACTTCTAATAAAAGCCTGACATATGTAAATGATTCATATGAAATTGGACCGGCAAGCTTTCACCGGAGTGGTTCCAATTGGGCTCTTAGCAACACTGGTCACTTTTTTGATAGTAGCCTTGTAGACTACTATACCTGGTCTAATCAAACTAATCTTGCCATGGAAAATTCCGAACTGTATATGGATGCACGTGTTTCTCCTCTTTCTTTAACATATTATGGATTTTGCCTGGGAAATGGAAACTATACAGTAAATCTCCATTTTGCGGAGATAATGTTTACAGATGATCAAACATATAACAGCCTTGGAAGGCGTATATTTGACATCTATATTCAGGGAAGGATGGTAATGAAGGATTTCAATATCGCAAAAGAAGCCGGTGGAGTGGGTAAGGCAATCATAAAGAAGTTCACTGCTATTGTGACTAGTAATACGTTGGAGATTCGCCTTCATTGGGCTGGGAAAGGCACATCTGGTATCCCATTTGATTCAGTATACGGTCCTCTTATATCGGCTATATCGGTTGATCCTGACTTTACACCCCCAGTGGAAAAAGGAAGTAGCATACCTGTGCGTAATATTGTGGCAATAGTAGTTTCTGCAGCCCTAGTTATCTTATTTGTATTTGGCATAGCTTGCTGGAGAATATGTCGACGACATATAGGTCCATTGGAAAGAGAGATGAAGAGTTTAGACCTTCAAACGGGTTTATTTACATTGAGACAAATCAAAGAAGCAACAAACAACTTTGATATTTCAAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTTTGTCCAATGGGACATTGATAGCAGTCAAACAACTTTCTTCTAAGTCAAAGCAAGGGAATCGTCCAGAGGAACACCAAATAAAATTAGATTGGTCAACAAGGAAGAAGATATGTGTTGGTATTGCTAGAGGTTTGGCATACCTTCATGAAGAATCAAGACTGAAGGTTGTTCATAGGGACATCAAATCCACTAATGTGTTACTTGATACGGATCTCGGCCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGCACTAGAATTGCCGGTACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGAAGGAGCAACACCTTTTATCGGACAAAGGAAGAAGCATTCTATCTTCTTGATTGGGCACATATGTTGAAAGAGAGAGGTGACCTAATGGAGCTAGTTGATAGCAGATTCGGTTCAGATTTCAAGAAAAAGGAAGTTATGGTGATGATCGATGTGGCTCTCCTATGCACCAATGTCACTTCGAACCTTAGGCCCTCTATGTCGTCAGTAGTAAGTATGCTTGAAGGAAGGACTGTAGTTCCAGAATTTGTGCCAGATTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGTAATGAGGCAGCATTACTATCAGACGGATAAAACAAGCAAGTCACAATCACAGAGTCGACGTTTATTGAATGATGGACCATGTACTGCTACAACTTCATCAGTTGACCTTTATTCTGTCCACCTTGATTCTTCCTATTTGGAGGAAAGAAATTAA 2901 0.3909 MKHIIINMNFSLILHILLLAFSLISSFTGGATLSQEEVQVMKDIGRTLGKKDWDFSVDPCSGQSNWNTSSVQVKGFENAVTCNCSFANATVCHIVSIVLKSQNLSGTLPTELVKLPYLQQINLKNNYLNGTIPPQWGSMINLIDIELLGNRLTGPIPKELGNITTLKILILKFNQLSGELPPELGNLHQLERLLLSSNYFTGNIPATYAKLTKLKQIRLCDNQFSGPIPDFIQSWTSLWRMVMQGSGLGGPIPSGISYLKNLTDLRVTDLKGPDSSFPQLINLTVLDTLVLRSCNLIGTVPEYLGNITTLRSLDLSFNKLSGQIPNTLGILENINLLYLTGNLFNGPLPKWIARPDYTDLSYNNLSIENPEQLTCQQGTVNLFSSSSKESNLGMVSCLRNNECPKNSYSLHINCGGKLITSNKSLTYVNDSYEIGPASFHRSGSNWALSNTGHFFDSSLVDYYTWSNQTNLAMENSELYMDARVSPLSLTYYGFCLGNGNYTVNLHFAEIMFTDDQTYNSLGRRIFDIYIQGRMVMKDFNIAKEAGGVGKAIIKKFTAIVTSNTLEIRLHWAGKGTSGIPFDSVYGPLISAISVDPDFTPPVEKGSSIPVRNIVAIVVSAALVILFVFGIACWRICRRHIGPLEREMKSLDLQTGLFTLRQIKEATNNFDISNKIGEGGFGPVYKGCLSNGTLIAVKQLSSKSKQGNRPEEHQIKLDWSTRKKICVGIARGLAYLHEESRLKVVHRDIKSTNVLLDTDLGPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTFYRTKEEAFYLLDWAHMLKERGDLMELVDSRFGSDFKKKEVMVMIDVALLCTNVTSNLRPSMSSVVSMLEGRTVVPEFVPDSSEVMDEKKMEVMRQHYYQTDKTSKSQSQSRRLLNDGPCTATTSSVDLYSVHLDSSYLEERN 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02353 966 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 37 198 - -
Trre12g02353 966 Gene3D Ribonuclease Inhibitor 207 268 IPR032675 -
Trre12g02353 966 Gene3D Ribonuclease Inhibitor 269 387 IPR032675 -
Trre12g02353 966 Gene3D Ribonuclease Inhibitor 50 206 IPR032675 -
Trre12g02353 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672|GO:0006468
Trre12g02353 966 SUPERFAMILY L domain-like 88 365 - -
Trre12g02353 966 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 204 271 - -
Trre12g02353 966 Gene3D Transferase(Phosphotransferase) domain 1 653 704 - -
Trre12g02353 966 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 708 - -
Trre12g02353 966 MobiDBLite consensus disorder prediction 922 941 - -
Trre12g02353 966 Pfam Protein kinase domain 715 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02353 966 SMART serkin_6 669 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02353 966 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 407 597 - -
Trre12g02353 966 Gene3D - 405 596 - -
Trre12g02353 966 ProSiteProfiles Protein kinase domain profile. 566 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02353 966 SUPERFAMILY Protein kinase-like (PK-like) 652 909 IPR011009 -
Trre12g02353 966 Gene3D Transferase(Phosphotransferase) domain 1 705 896 - -
Trre12g02353 966 FunFam Putative LRR receptor-like serine/threonine-protein kinase 699 904 - -
Trre12g02353 966 MobiDBLite consensus disorder prediction 923 941 - -
Trre12g02353 966 Pfam Malectin domain 409 592 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02353 Trre-Chr12 27066024 27074232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02353 24 934 Receptor kinase-like Gene Family AT1G53420 50.363 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02353 Pkinase 1.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02353 - - gmx:100786496 1355.12