Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02352 ATGAAGCACATCATCATAAACATGAATTTCTCTCTAATACTACATATTTTGCTTCTTGCCTTTTCTTTGATTTCTTCATTTACTGGTGGAGCTACTCTGTCACAAGAAGAAGTACAAGTTATGAAAGACATAGGAAGGACACTTGGGAAGAAGGATTGGGATTTCAGCGTAGATCCATGCAGTGGACAAAGTAACTGGAACACATCTTCTGTGCAAGTGAAAGGGTTTGAAAATGCTGTCACTTGCAATTGCTCTTTTGCAAATGCCACTGTCTGCCATATTGTTAGCATTGTTCTGAAGTCACAAAATCTTTCGGGCACACTTCCAACAGAACTTGTGAAATTGCCTTACCTCCAACAAATTAATCTCAAAAACAACTACCTTAATGGTACAATTCCACCACAATGGGGTTCCATGATCAATCTTATCGACATTGAACTATTAGGAAATCGATTAACAGGTCCAATCCCAAAAGAGCTTGGAAATATCACCACCCTGAAAATATTGATCCTGAAGTTCAATCAATTATCTGGAGAGCTTCCTCCAGAGCTTGGGAATCTTCACCAGCTTGAAAGACTGCTTCTTTCCTCGAACTATTTTACTGGAAATATACCTGCAACATATGCTAAGCTCACTAAACTGAAGCAAATTCGACTTTGCGATAATCAATTCTCTGGACCTATACCTGATTTCATTCAGAGCTGGACAAGTCTTTGGAGGATGGTGATGCAAGGGAGTGGTTTGGGTGGCCCAATTCCTTCTGGAATTTCATATCTAAAAAACCTCACTGATTTGAGAGTAACTGACTTGAAAGGACCGGATTCTTCTTTTCCGCAACTAATTAACTTGACTGTTCTGGATACATTAGTACTGAGGAGTTGCAATCTTATAGGAACAGTTCCTGAATATCTTGGAAATATTACCACATTAAGATCGTTAGACCTCAGTTTTAACAAATTAAGTGGACAGATACCGAACACTTTGGGCATCCTTGAGAACATAAATCTACTATACTTAACTGGAAACCTTTTTAATGGACCACTTCCAAAGTGGATAGCTAGACCAGACTACACAGATCTATCATATAACAACTTGAGCATTGAAAATCCTGAGCAGTTGACATGTCAACAGGGAACAGTGAACTTATTTTCATCATCTTCAAAGGAAAGTAACTTAGGAATGGTTTCATGTTTGAGGAACAATGAATGTCCTAAAAATTCATACTCTCTCCATATCAATTGTGGTGGAAAGCTCATAACTTCTAATAAAAGCCTGACATATGTAAATGATTCATATGAAATTGGACCGGCAAGCTTTCACCGGAGTGGTTCCAATTGGGCTCTTAGCAACACTGGTCACTTTTTTGATAGTAGCCTTGTAGACTACTATACCTGGTCTAATCAAACTAATCTTGCCATGGAAAATTCCGAACTGTATATGGATGCACGTGTTTCTCCTCTTTCTTTAACATATTATGGATTTTGCCTGGGAAATGGAAACTATACAGTAAATCTCCATTTTGCGGAGATAATGTTTACAGATGATCAAACATATAACAGCCTTGGAAGGCGTATATTTGACATCTATATTCAGGGAAGGATGGTAATGAAGGATTTCAATATCGCAAAAGAAGCCGGTGGAGTGGGTAAGGCAATCATAAAGAAGTTCACTGCTATTGTGACTAGTAATACGTTGGAGATTCGCCTTCATTGGGCTGGGAAAGGCACATCTGGTATCCCATTTGATTCAGTATACGGTCCTCTTATATCGGCTATATCGGTTGATCCTGACTTTACACCCCCAGTGGAAAAAGGAAGTAGCATACCTGTGCGTAATATTGTGGCAATAGTAGTTTCTGCAGCCCTAGTTATCTTATTTGTATTTGGCATAGCTTGCTGGAGAATATGTCGACGACATATAGGTCCATTGGAAAGAGAGATGAAGAGTTTAGACCTTCAAACGGGTTTATTTACATTGAGACAAATCAAAGAAGCAACAAACAACTTTGATATTTCAAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTTTGTCCAATGGGACATTGATAGCAGTCAAACAACTTTCTTCTAAGTCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAACATCCTTATCTTGTTAAACTCTATGGCTGTTGTGTCGAGGGAGATCAGTTGTTGCTGATATATGAATACCTGGAAAACAATAGTCTTGCTCGTCCAGAGGAACACCAAATAAAATTAGATTGGTCAACAAGGAAGAAGATATGTGTTGGTATTGCTAGAGGTTTGGCATACCTTCATGAAGAATCAAGACTGAAGGTTGTTCATAGGGACATCAAATCCACTAATGTGTTACTTGATACGGATCTCGGCCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGCACTAGAATTGCCGGTACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGAAGGAGCAACACCTTTTATCGGACAAAGGAAGAAGCATTCTATCTTCTTGATTGGGCACATATGTTGAAAGAGAGAGGTGACCTAATGGAGCTAGTTGATAGCAGATTCGGTTCAGATTTCAAGAAAAAGGAAGTTATGGTGATGATCGATGTGGCTCTCCTATGCACCAATGTCACTTCGAACCTTAGGCCCTCTATGTCGTCAGTAGTAAGTATGCTTGAAGGAAGGACTGTAGTTCCAGAATTTGTGCCAGATTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGTAATGAGGCAGCATTACTATCAGACGGATAAAACAAGCAAGTCACAATCACAGAGTCGACGTTTATTGAATGATGGACCATGTACTGCTACAACTTCATCAGTTGACCTTTATTCTGTCCACCTTGATTCTTCCTATTTGGAGGAAAGAAATTAA 3033 0.3904 MKHIIINMNFSLILHILLLAFSLISSFTGGATLSQEEVQVMKDIGRTLGKKDWDFSVDPCSGQSNWNTSSVQVKGFENAVTCNCSFANATVCHIVSIVLKSQNLSGTLPTELVKLPYLQQINLKNNYLNGTIPPQWGSMINLIDIELLGNRLTGPIPKELGNITTLKILILKFNQLSGELPPELGNLHQLERLLLSSNYFTGNIPATYAKLTKLKQIRLCDNQFSGPIPDFIQSWTSLWRMVMQGSGLGGPIPSGISYLKNLTDLRVTDLKGPDSSFPQLINLTVLDTLVLRSCNLIGTVPEYLGNITTLRSLDLSFNKLSGQIPNTLGILENINLLYLTGNLFNGPLPKWIARPDYTDLSYNNLSIENPEQLTCQQGTVNLFSSSSKESNLGMVSCLRNNECPKNSYSLHINCGGKLITSNKSLTYVNDSYEIGPASFHRSGSNWALSNTGHFFDSSLVDYYTWSNQTNLAMENSELYMDARVSPLSLTYYGFCLGNGNYTVNLHFAEIMFTDDQTYNSLGRRIFDIYIQGRMVMKDFNIAKEAGGVGKAIIKKFTAIVTSNTLEIRLHWAGKGTSGIPFDSVYGPLISAISVDPDFTPPVEKGSSIPVRNIVAIVVSAALVILFVFGIACWRICRRHIGPLEREMKSLDLQTGLFTLRQIKEATNNFDISNKIGEGGFGPVYKGCLSNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARPEEHQIKLDWSTRKKICVGIARGLAYLHEESRLKVVHRDIKSTNVLLDTDLGPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTFYRTKEEAFYLLDWAHMLKERGDLMELVDSRFGSDFKKKEVMVMIDVALLCTNVTSNLRPSMSSVVSMLEGRTVVPEFVPDSSEVMDEKKMEVMRQHYYQTDKTSKSQSQSRRLLNDGPCTATTSSVDLYSVHLDSSYLEERN 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02352 1010 CDD STKc_IRAK 675 938 - -
Trre12g02352 1010 Pfam Malectin domain 409 592 IPR021720 -
Trre12g02352 1010 MobiDBLite consensus disorder prediction 967 985 - -
Trre12g02352 1010 SUPERFAMILY Protein kinase-like (PK-like) 652 953 IPR011009 -
Trre12g02352 1010 Gene3D Ribonuclease Inhibitor 269 387 IPR032675 -
Trre12g02352 1010 Gene3D Ribonuclease Inhibitor 207 268 IPR032675 -
Trre12g02352 1010 Gene3D Ribonuclease Inhibitor 50 206 IPR032675 -
Trre12g02352 1010 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 407 597 - -
Trre12g02352 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Trre12g02352 1010 ProSiteProfiles Protein kinase domain profile. 669 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02352 1010 SMART serkin_6 669 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02352 1010 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 976 - -
Trre12g02352 1010 FunFam Putative LRR receptor-like serine/threonine-protein kinase 745 948 - -
Trre12g02352 1010 Pfam Protein kinase domain 671 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02352 1010 Gene3D - 405 596 - -
Trre12g02352 1010 Gene3D Phosphorylase Kinase; domain 1 637 742 - -
Trre12g02352 1010 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 204 271 - -
Trre12g02352 1010 MobiDBLite consensus disorder prediction 966 985 - -
Trre12g02352 1010 Gene3D Transferase(Phosphotransferase) domain 1 743 946 - -
Trre12g02352 1010 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 639 744 - -
Trre12g02352 1010 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 37 198 - -
Trre12g02352 1010 SUPERFAMILY L domain-like 88 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02352 Trre-Chr12 27066024 27074232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02352 24 978 Receptor kinase-like Gene Family AT1G53420 54.301 0.0 1000
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02352 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02352 - - gmx:100786496 1453.73