Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02351 ATGAACATGTCATTGCCTCTATTATTCCATCTTTTTGTTCTTGCCTTTTGTTTTATCTCTTCATTTGCTAGTGGGGCTACTCTATTAGAAGAAGAAGTACAAGTAATGAAAGACATAGGAAGGACACTTGGGAAGAAGGATTGGGACTTCAGCAAAGATCCATGTAGTGGAGAAAGTAACGGGACATCTGTGCAAGTTAGTGGATCTGAAAATGCTGTAACTTGCAATTGTTCTTTTGCCAATGCTACTGTATGCCATATTGTTAGTATTGTTCTGAAGTCACAAAATCTTTCTGGCACACTTCCAAGTGAACTTGATAGATTGCCATACCTCCAAGAAATTGATCTCACACTCAACTACCTTAATGGTACAATCCCTCCACAATGGGCATCCATGACCAATCTTGTCATCATTTCACTATATGGAAATCGGTTAACCGGTCCAATCCCAAAAGAACTTGGAAATATCACCACCCTCCAAACCTTGGTTCTAGAGTTCAATCAATTATCTGGAGAGCTTCCTCCAGAGCTTGGGAATCTTCACCAGCTTGAAATTATGCTTCTTACCTCCAACAATTTCACTGGAAATTTACCTGCAACATTTTCTAAGCTCACTAAATTGAAGCATGTTCGACTCGGCGGCAATCTATTCTCTGGAACATTACCTGATTTCATTCAGAGTTGGACAGGTCTTCAAAGGCTGGTAATGCAAGGGAGTGGTTTGAGTGGCCCAGTTCCTTCTGGAATTTCATATCTGAAAAACCTCACTGACTTGAAAATAAGTGACTTGAAAGGACCAGATTCTCCTTTTCCGCAACTTATTAACTTGACAGTTCTGCAAACATTAGTATTGAGGAGTTGCAATCTTATAGGAACAGTTCCTGAATATCTTGGAAATATTACCACATTAAGAAACTTAGATCTCAGTTTTAACAAATTAAGTGGACAAATTCCGAACACATTGGGCGTCCTCGAGAACATAAATATTCTATTCTTAACTGGAAACCTTTTTACTGGACCACTGCCAAATTGGATTGCTAGACCAGACTACACAGATCTATCATATAACAACTTGAGCATTGAAAATCCAGAGCAGTTGACATGTCAACAGGGAACAGTGAACTTGTTTGCATCATCTTCAAAGAGAAGTAACTTGGGAATGGTTTCATGTTTGGGGAACAATGGCTGTCCTAAAAAGTCATACTCTCTCCATATCAATTGTGGTGGGAAGCCCATAACTTCTAATAAAAGCTTGACATATGACGATGATTCAAATGAAGTTGGACCAGCAAGCTTTCACCTGAGTGGTTCGAATTGGGCTCTTAGCAACACTGGTCACTTCTTTGATAGTGGCCTTAAGGACTACTATACCTGGTCTAATAAAACTAATCTTGCCATGGAAAACGCCGAACTGTATATGGATGCACGTGTTTCTCCTCTGTCTCTAACATATTATGGATTTTGCCTGGGAAACGGAAACTATACAGTAAATCTCCATTTTGCGGAGATAATGTTTACAGATGATCAAACATATAGCAGCCTTGGAAGGCGTATATTTGACATCTATATACAGGGAAGGTTGGTGCTGAAGGATTTCAATATTGCAAAAGAAGCCGGTGGAGTTGGTAAGGCTATCATAAAGAAGTTCACTGCTATTGTGAGTAATAATAACTTGGATATTCGCCTTCATTGGGCTGGGAAAGGGACAACTGCTATTCCATTTGGATCAGTATATGGTCCTCTTATATCGGCTATATCGGTTGATCCTGACTTTACACCCCCAGTGGAAAAAGGAAGTAGTATACCTGCGCGGAATATTGTGGCAATAGTAGTTTCTGTAGCACTTGTTATCTTATTTGTATTTGGCATAGCTTGGTGGAGAATATGTCGACGACAGATAGGGCCATTAGAGAGGGAGATGAAGAGTTTAGACCTTCAAACGGGTTTATTTACATTGAGACAAATCAAAGAAGCAACAAACAACTTTGATATTTCAAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTTTACCCAATGGGACATTGATAGCTGTCAAACAACTTTCTTCTAAATCAAAGCAAGGGAATCGCGAGTTTTTAAATGAGATTGGCATGATTTCTGCTTTGCAACATCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGATCAGTTGTTACTGATATATGAATACTTGGAAAACAATAGTCTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATAAGATTAGATTGGTCAACAAGGAAGAAGATCTGTGTTGGTATTGCTAGAGGTTTGGCATACCTTCATGAAGAATCAAGAATGAAAGTTGTTCATCGGGACATTAAGGCCACTAATGTGTTACTTAATACGGATCTCGACCCAAAGATATCTGATTTTGGTTTAGCCAAGCTTGATGAAGAGGACAATACTCACATTAGCACTAGAATTGCTGGTACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATCGTTAGTGGAAAGAGCAACACCCTTTATCGTACAAAGGAAGAAGCATTTTACCTTCTTGATTGGGCACATTCGTTGAGAGAAAAGGGTGACCTAATGGAACTTGTTGATAGAAGATTAGGTTCAGATTTGAATAAAAAAGAAGCTCTGGTGATGATCAATGTGGCTCTTCTGTGCACCAATGTCACTTCAAACCTTCGGCCCTCTATGTCGTCAGTGGTAAGTATGCTTGAAGGAACGACTATGGTTCCAGAATTTGTAGATTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGTGATGAGGCAGTATTACTATCAGATAGAAGAAAATGAGATAAGTAAGCCACAAACACAAAGTCAGAGTTTATTAAGTGATGGGCCATGGACTGCTACATCTTCATCAGGTGTAGACCTTTATCCTATCCACAATGATTCTTCCTTATGGGAGGGAAGAAGTTAA 3030 0.3931 MNMSLPLLFHLFVLAFCFISSFASGATLLEEEVQVMKDIGRTLGKKDWDFSKDPCSGESNGTSVQVSGSENAVTCNCSFANATVCHIVSIVLKSQNLSGTLPSELDRLPYLQEIDLTLNYLNGTIPPQWASMTNLVIISLYGNRLTGPIPKELGNITTLQTLVLEFNQLSGELPPELGNLHQLEIMLLTSNNFTGNLPATFSKLTKLKHVRLGGNLFSGTLPDFIQSWTGLQRLVMQGSGLSGPVPSGISYLKNLTDLKISDLKGPDSPFPQLINLTVLQTLVLRSCNLIGTVPEYLGNITTLRNLDLSFNKLSGQIPNTLGVLENINILFLTGNLFTGPLPNWIARPDYTDLSYNNLSIENPEQLTCQQGTVNLFASSSKRSNLGMVSCLGNNGCPKKSYSLHINCGGKPITSNKSLTYDDDSNEVGPASFHLSGSNWALSNTGHFFDSGLKDYYTWSNKTNLAMENAELYMDARVSPLSLTYYGFCLGNGNYTVNLHFAEIMFTDDQTYSSLGRRIFDIYIQGRLVLKDFNIAKEAGGVGKAIIKKFTAIVSNNNLDIRLHWAGKGTTAIPFGSVYGPLISAISVDPDFTPPVEKGSSIPARNIVAIVVSVALVILFVFGIAWWRICRRQIGPLEREMKSLDLQTGLFTLRQIKEATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIRLDWSTRKKICVGIARGLAYLHEESRMKVVHRDIKATNVLLNTDLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTLYRTKEEAFYLLDWAHSLREKGDLMELVDRRLGSDLNKKEALVMINVALLCTNVTSNLRPSMSSVVSMLEGTTMVPEFVDSSEVMDEKKMEVMRQYYYQIEENEISKPQTQSQSLLSDGPWTATSSSGVDLYPIHNDSSLWEGRS 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02351 1009 SMART serkin_6 662 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02351 1009 SUPERFAMILY Protein kinase-like (PK-like) 645 951 IPR011009 -
Trre12g02351 1009 ProSiteProfiles Protein kinase domain profile. 662 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02351 1009 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 631 737 - -
Trre12g02351 1009 MobiDBLite consensus disorder prediction 971 995 - -
Trre12g02351 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Trre12g02351 1009 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 960 - -
Trre12g02351 1009 Pfam Protein kinase domain 664 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02351 1009 FunFam Putative LRR receptor-like serine/threonine-protein kinase 738 945 - -
Trre12g02351 1009 CDD STKc_IRAK 668 935 - -
Trre12g02351 1009 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 270 364 - -
Trre12g02351 1009 Pfam Malectin domain 402 585 IPR021720 -
Trre12g02351 1009 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 29 264 - -
Trre12g02351 1009 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 400 590 - -
Trre12g02351 1009 SUPERFAMILY L domain-like 81 358 - -
Trre12g02351 1009 Gene3D Transferase(Phosphotransferase) domain 1 738 949 - -
Trre12g02351 1009 Gene3D Ribonuclease Inhibitor 198 395 IPR032675 -
Trre12g02351 1009 Gene3D Phosphorylase Kinase; domain 1 630 737 - -
Trre12g02351 1009 Gene3D - 398 589 - -
Trre12g02351 1009 Gene3D Ribonuclease Inhibitor 33 197 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02351 Trre-Chr12 27047192 27059933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02351 19 982 Receptor kinase-like Gene Family AT1G53420 55.041 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02351 Pkinase 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02351 - - gmx:100786496 1456.81