Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02350 ATGAAGCTTATCATTATGAACATGTCTTTACCTCTATTATTCCATCTTTTTCTTGTCTTTTGTTTTATCTCTTCATTTGCTAGTGGAGCTACTCTATTAGAAGAAGAAGTACAAGTAATGAAAGAAATAGGGAGGACACTTGGGAAGAAGGATTGGGACTTCAGCAAAGATCCATGTAGTGGAGAAAACAATTGGACATCTTCTGTCAAAGTGAAAGGGTTTGAAAGTGCAGTAACTTGCAATTGCTCTTTTGCAAATGCAACTATCTGCCATATTGTTAGCATTGTTTTGAAGTCACAAAATCTTTCTGGCACACTTCCAAGGGAATTTGTGAAATTGCCTTACCTCCAACAAATTGATCTCACACGTAACTACCTTAACGGTACAATCCCTTCACAATGGGGTTCCATGATCAATCTTGTCAACATTTCACTATTAGGAAATCGATTAACTGGTCAAATTCCAAAAGAACTTGGAAAAATCACTACCCTCAAAAGCTTGGTTTTGGAGTTCAATCAATTATCTGGAAAGCTTCCTTCAGAGCTTGGGAATCTTCACCAGCTTGAAAGACTGCTTCTTACCTCTAACAATCTTACTGGAAATTTACCTGCAACATTTGCTAAGCTCACTAAATTGAAGCAAATTCGACTCGGCGACAATCAATTCTCTGGAACATTACCTGATTTCATTCAGAGTTGGACAGGTCTTCAAAGGCTGGTGATGCAAGCGAGTGGTTTGAGTGGCCCAGTTCCTTCTGGTATTTCATATCTGAAAAACCTCACTGACTTAAGAATAAGTGACTTGAAAGGACCAGATTCTCCTTTTCCGCAACTTATTAAATTAACAATTCTGGAAACATTAGTACTGAGGAGTTGCAATCTTATAGGAACTGTTCCTGCATATCTTGGAAATATTACCACTTTAAGATCATTAGACCTCAGTTTTAACAAATTAAGTGGACAGATTCCGAACACCTTGGGCGTCCTCCAGGACATAAATATACTATACTTAACTGGAAACCTTTTTACTGGACCACTGCCAAATTGGATAGCTAGACCAGACTACACAGATCTATCATATAACAACTTGAGCATTGAAAATCCAGAGCAGTTAACATGTCAACAGGGAACAGTGAACTTATTTTCATCATCTTCAAAGGGAAGTAACTTGGGAATGGTTTCATGTTTGGGGAACAATGGTTGTCCTAAACATTCATACTCTCTCCATATCAACTGTGGTGGGAAGCTCATAACTTCTAATAAAAGCTTGACATATGACGACGATTCATATGAAGTTGGACCAGCAAGCTTTCACTGGAGTGGTTCGAACTGGGCTCTCAGCAACACTGGTCACTTCTTTGATAGTAGCCTTGTAGACTACTATACCTGGTCTAATAAAAATAATCTTTCCATGGAAAATGCCGAACTGTATATGGATGCACGTGTTTCTCCTCTTTCTTTAACATATTACGGATTTTGCCTGGGTAATGGAAACTACACAGTAAATCTCCATTTTGCGGAGATAATGTTTACGGATGATCAAACATATAGCAGCCTTGGAAGGCGCATATTTGACATCTATATTCAGGGAAGGTTGGTGCTGAAGGATTTCAATATTGCAAAAGAAGCCGGTGGAGTTGGTAAGGCTATTATAAAGAAGTTCACTGCTATTGTGACTAATAATACCTTGGAGATCCGCCTTCATTGGGCTGGGAAAGGGACAACTGCTATTCCATTTGGATCAGTACATGGTCCTCTTATATCTGCTATATCGGTCGATCCAGATTTTACACCCCCAGTGGAAAAAGGAAGTAGCATACCTGTGCGTAATATTGTGGCAATAGTAGTTTCTGCAGCACTTGTTATCTTATTTGTATTTGGCATAGCTTTGTGGAGAATATGTCGACGACAGATAGGTCCATTAGAAAGAGAGCTGAAGAGCTTAGACCTTCAAACGGGTTTATTTACCTTGAGACAAATCAAGGAAGCAACAAACAGCTTTGATATTTCAAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGCTTACCCAATGGGACATTGATAGCAGTCAAACAACTTTCATCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAACATCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGACCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTCTAGCTCGTGCTTTATTTGGTCCAGAAGAACACCGAATAAGATTAGATTGGTCAACAAGGAAGAAGATATGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGATTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTGTTACTTGATACGAATCTTGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGCACTAGAATTGCCGGTACCTATGGATATATGGCTCCGGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTCAGTGGAAAGAGCAACACCCTTTATCAGTCAAAGGAGGAAGCATTTTATCTTCTTGATTGGGCACATATGTTGAAAGAGAGAGGTGACCTAATGGAGCTAGTTGATAGCAGATTAGGTTCAGATTTCAACAAAAAAGAAGTTCTGGTGGTGATCAATGTGGCTCTCCTATGCACCAATGTCACTTCAAACCTTAGGCCGTCTATGTCGTCAGTGGTAAGTATGCTCGAAGGAAGCACCGTGGTTCCCGAATCTGTTCCAGTTTCAAGTGAAGTAATGGATGAAAAGAAGATGGAAGTAATGAGGCAGTATTACTGTCAGATGGAAGAAAATAACACAAGCAAGTCACAAACACAGAGTCGGCATTTATTAAATGATGCGCCATGGACTGCTTCATCTTCGTCAGCTGACCTTTATCCTATCCACCTTGATTCTTCCTATTTGGAGGACAGAAATTAA 3045 0.3944 MKLIIMNMSLPLLFHLFLVFCFISSFASGATLLEEEVQVMKEIGRTLGKKDWDFSKDPCSGENNWTSSVKVKGFESAVTCNCSFANATICHIVSIVLKSQNLSGTLPREFVKLPYLQQIDLTRNYLNGTIPSQWGSMINLVNISLLGNRLTGQIPKELGKITTLKSLVLEFNQLSGKLPSELGNLHQLERLLLTSNNLTGNLPATFAKLTKLKQIRLGDNQFSGTLPDFIQSWTGLQRLVMQASGLSGPVPSGISYLKNLTDLRISDLKGPDSPFPQLIKLTILETLVLRSCNLIGTVPAYLGNITTLRSLDLSFNKLSGQIPNTLGVLQDINILYLTGNLFTGPLPNWIARPDYTDLSYNNLSIENPEQLTCQQGTVNLFSSSSKGSNLGMVSCLGNNGCPKHSYSLHINCGGKLITSNKSLTYDDDSYEVGPASFHWSGSNWALSNTGHFFDSSLVDYYTWSNKNNLSMENAELYMDARVSPLSLTYYGFCLGNGNYTVNLHFAEIMFTDDQTYSSLGRRIFDIYIQGRLVLKDFNIAKEAGGVGKAIIKKFTAIVTNNTLEIRLHWAGKGTTAIPFGSVHGPLISAISVDPDFTPPVEKGSSIPVRNIVAIVVSAALVILFVFGIALWRICRRQIGPLERELKSLDLQTGLFTLRQIKEATNSFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHRIRLDWSTRKKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDTNLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTLYQSKEEAFYLLDWAHMLKERGDLMELVDSRLGSDFNKKEVLVVINVALLCTNVTSNLRPSMSSVVSMLEGSTVVPESVPVSSEVMDEKKMEVMRQYYCQMEENNTSKSQTQSRHLLNDAPWTASSSSADLYPIHLDSSYLEDRN 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02350 1014 CDD STKc_IRAK 673 940 - -
Trre12g02350 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 595 - -
Trre12g02350 1014 Pfam Protein kinase domain 669 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02350 1014 Pfam Malectin domain 407 590 IPR021720 -
Trre12g02350 1014 Gene3D Ribonuclease Inhibitor 270 395 IPR032675 -
Trre12g02350 1014 SMART serkin_6 667 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02350 1014 Gene3D Phosphorylase Kinase; domain 1 636 742 - -
Trre12g02350 1014 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 975 - -
Trre12g02350 1014 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 202 269 - -
Trre12g02350 1014 ProSiteProfiles Protein kinase domain profile. 667 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02350 1014 SUPERFAMILY Protein kinase-like (PK-like) 650 952 IPR011009 -
Trre12g02350 1014 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 636 742 - -
Trre12g02350 1014 Gene3D - 403 594 - -
Trre12g02350 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 36 196 - -
Trre12g02350 1014 FunFam Putative LRR receptor-like serine/threonine-protein kinase 743 949 - -
Trre12g02350 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Trre12g02350 1014 Gene3D Ribonuclease Inhibitor 203 269 IPR032675 -
Trre12g02350 1014 Pfam Leucine Rich Repeat 308 329 IPR001611 GO:0005515
Trre12g02350 1014 Gene3D Ribonuclease Inhibitor 45 202 IPR032675 -
Trre12g02350 1014 SUPERFAMILY L domain-like 86 363 - -
Trre12g02350 1014 Gene3D Transferase(Phosphotransferase) domain 1 743 953 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02350 Trre-Chr12 27031105 27039860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02350 23 999 Receptor kinase-like Gene Family AT1G53420 54.803 0.0 1022
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02350 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02350 - - gmx:100786496 1495.33