Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02349 ATGAGCACTTCCTCTCAATTTCTCTTGCTTTCACTAATTTTCATTTGGTTCATATCTCTATCGGCTTTTGGAGCTACTACTATTCACCCCGACGAAAAGAAAGCTCTTGAATCTATAGCTGAATCACTTGGTAAGAAGGATTGGAACTTCGACATAGATCCATGCAGTAACAAACCTAACTGGGCTACACCTAAGCCTACGCCTCTCACTCCCAGATTAAGTATCGTAGAGAACAATGTCACCTGCAACTGCAGTGTTGCTGGTGCCAACTTCTGTCATGTTGTTTCAATAACTTTGAAAGGGCAAAATCTCCCCGGCACTCTCCCACCAGAACTGAACAGGTTGCATTACCTTCAATTTATTGACCTCTCTCGCAATTACTTGAATGGTACAATTCCTAAAGAATGGGGATCCATGACGAATCTTCTTAACATTTCTCTCCCCTCAAATCGATTAACGGGTTCAATACCAGTGGAGATTGCAAATATATCTACTCTGATACAATTGGACTTAACGGCCAATCGAATTTCTAATAATATTCCTCGTGAGCTTGGGGATTTGACCCAGATTCGAGCACTGCGACTTTCCTCAAACAATTTTACTGGAGAACTACCTGCAACATTGGCCAAGCTCACTACATTGCTAAATTTCCAAATTTCTGACAACAACTTCTCTGGAAAGATACCTGATTTTATTCAGAACTGGACAAATATCAATTCGCTATCCGTTCAAGGGAGTGGATTAAGTGGCCCAATTCCTTCTGAAATTTCACTTTTGAGAAACATAACTGACGTGAGAATAAGTGATTTGAATGGATTTGAATATGCACCTTTGCCACAATTTAATAATATGCCATTGTTAAAAAATCTGATTCTGAGGAACTGCAAAATCAATGGGACACTGCATGATTATCTTGGGACTATAGCAACATTAAAACACTTAGACCTCAGCTTTAACAACATAAGTGGAACAATTCCGAGTACCTATGCTGAAACAAACGGTGTGAAATTCATATTTTTAACTGGAAACCTTCTCACTGGATCGTTGCCTGATTGGAGAAGAAACATCGACGTAGATATTTCATACAATAATTTAAGCATGAGCCAAGGGAGTCAGATATGTCAAAGTGATAAAGTGAACTTGTTTTCTCCAACATTGGCACACAATAACATGGGAACAGATTCGTGTTTGAGAGTATGTTCCAAACCCTTGTACTCCCTTTATATAAATTGTGGTGGAAACCAAGCAACAGTCAACGGAAAAACTTATAATTATGATTCGGATTCATCTGGACCAGCTAAGTTCCATGTCAGTCCAACAGGAAATTGGGCATTTAGCACCACTGGTATATTCATTGATGGTGATCAACTTGGAGAATTTTATCTCCCGCAAAATGTCACTACACTTACTATGGCAGATTCTGAATTGTACATGACTGCACGTGGTTCTCCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAATGGAAACTACACAGTGAAACTACATTTTGCTGAAATAATGTTCACAGATGATCAAACATATGGTAGTCTAGGAAGGCGGGTATTTGATATCTACCTTCAGGGAAAGGTGGTGCAAAAGGACTTCAATATTGCAGAAGAAGCCGGAGGAGTTGGTAAGAAAGTCATAAAACTGTTCAAAGATGTTGATGTTACTAGTAATACCTTAGAGATCCGCCTGTATTGGGCTGGAAAAGGGACACAGTCTCTCCCAAATAGATCAGTATATGGTCCTATTATATCAGCAATATCTGTGGAATCTGACTCTCCACCTGGAAGCATATCTACAGGAGCTGTGGTTGGAATTGTGGTTGCAGCATCAGTTATTATTATCATTCTAGTATTTGGTTTTCTTTGGTGGAAGGGATGTTTTGGAAAGAAAAACACATTAGCAAGAGAGTTAAATAGTTTAGACGTACAGACGGGTTTATTTACCTTGAGACAAATCAAAGCAGCGACAAATTACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTCAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCTTATCTTGTTAAACTCTACGGTTGCTGTATGGAGGGGGATCAGTTGTTGCTGATATATGAATATTTGGCAAACAATAGTCTAGCTCGTGCTTTATTCGGTCCAGAGGAACACCAAATAAAATTAGATTGGTCTACAAGACAGAAGATTTGTGTTGGCATTGCTAAAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTCCACAGGGACATCAAGGCCACTAATGTATTGCTGGATACGGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTGGACGAGGAGGAAAATACTCACATTAGTACTAGAATTGCTGGGACCTACGGATATATGGCTCCTGAGTATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGCTTTGGAGATCGTTAGTGGAAGGAGCAACACCATGCATCGGGCAAAGGAGGAAGCATTCTATATTCTTGATTGGGCTAATTTGTTGAAAGAGAGAGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGATGATCAATGTAGGTCTTCTATGCACCAATGTAACTTCAACTCTTAGGCCCTCCATGTCGTCAGTTGTAAGTATGCTCGAAGGAAGGACTGTGGTTCCAGAATTTGTTTCAGGTTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAACATTACCATCAGATTGAGGAATCTACAATAACCAAGTCACAAACACAAAGTCAAAGTTTATCAATTGACGGGCCATGGACTGCTTCATCATCATCGACTGTAGATCTTCATCCTATTCGCAATGATTCTTCCCATTGGGAAGAAAGAAAATAA 3039 0.3955 MSTSSQFLLLSLIFIWFISLSAFGATTIHPDEKKALESIAESLGKKDWNFDIDPCSNKPNWATPKPTPLTPRLSIVENNVTCNCSVAGANFCHVVSITLKGQNLPGTLPPELNRLHYLQFIDLSRNYLNGTIPKEWGSMTNLLNISLPSNRLTGSIPVEIANISTLIQLDLTANRISNNIPRELGDLTQIRALRLSSNNFTGELPATLAKLTTLLNFQISDNNFSGKIPDFIQNWTNINSLSVQGSGLSGPIPSEISLLRNITDVRISDLNGFEYAPLPQFNNMPLLKNLILRNCKINGTLHDYLGTIATLKHLDLSFNNISGTIPSTYAETNGVKFIFLTGNLLTGSLPDWRRNIDVDISYNNLSMSQGSQICQSDKVNLFSPTLAHNNMGTDSCLRVCSKPLYSLYINCGGNQATVNGKTYNYDSDSSGPAKFHVSPTGNWAFSTTGIFIDGDQLGEFYLPQNVTTLTMADSELYMTARGSPISLTYYGFCLANGNYTVKLHFAEIMFTDDQTYGSLGRRVFDIYLQGKVVQKDFNIAEEAGGVGKKVIKLFKDVDVTSNTLEIRLYWAGKGTQSLPNRSVYGPIISAISVESDSPPGSISTGAVVGIVVAASVIIIILVFGFLWWKGCFGKKNTLARELNSLDVQTGLFTLRQIKAATNYFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCMEGDQLLLIYEYLANNSLARALFGPEEHQIKLDWSTRQKICVGIAKGLAYLHEESRLKVVHRDIKATNVLLDTDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTMHRAKEEAFYILDWANLLKERGDLMELVDRRLGSDFNKKEAMVMINVGLLCTNVTSTLRPSMSSVVSMLEGRTVVPEFVSGSSEVMDEKKLEVMRQHYHQIEESTITKSQTQSQSLSIDGPWTASSSSTVDLHPIRNDSSHWEERK 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02349 1012 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 596 - -
Trre12g02349 1012 Gene3D Phosphorylase Kinase; domain 1 632 739 - -
Trre12g02349 1012 Gene3D Ribonuclease Inhibitor 274 395 IPR032675 -
Trre12g02349 1012 Gene3D Ribonuclease Inhibitor 205 273 IPR032675 -
Trre12g02349 1012 SUPERFAMILY L domain-like 89 354 - -
Trre12g02349 1012 FunFam Putative LRR receptor-like serine/threonine-protein kinase 740 946 - -
Trre12g02349 1012 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 633 739 - -
Trre12g02349 1012 SMART serkin_6 664 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02349 1012 SUPERFAMILY Protein kinase-like (PK-like) 646 946 IPR011009 -
Trre12g02349 1012 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 974 - -
Trre12g02349 1012 ProSiteProfiles Protein kinase domain profile. 664 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02349 1012 MobiDBLite consensus disorder prediction 968 1012 - -
Trre12g02349 1012 Gene3D - 405 596 - -
Trre12g02349 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Trre12g02349 1012 Pfam Protein kinase domain 666 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02349 1012 Gene3D Ribonuclease Inhibitor 31 204 IPR032675 -
Trre12g02349 1012 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 204 - -
Trre12g02349 1012 Pfam Malectin domain 406 591 IPR021720 -
Trre12g02349 1012 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 205 271 - -
Trre12g02349 1012 CDD STKc_IRAK 670 937 - -
Trre12g02349 1012 MobiDBLite consensus disorder prediction 969 1001 - -
Trre12g02349 1012 Gene3D Transferase(Phosphotransferase) domain 1 740 946 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02349 Trre-Chr12 27021509 27030058 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02349 25 973 Receptor kinase-like Gene Family AT1G53420 52.593 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02349 Pkinase 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02349 - - gmx:732563 1291.95