Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02348 ATGAGCACTTCCTCTCAATTTCTCTTGCTTTCACTAATTTTCATTTGGTTCATATCTCTATCGGCTTTTGGAGCTACTACTATTCACCCCGACGAAAAGAAAGCTCTTGAATCTATAGCTGAATCACTTGGTAAGAAGGATTGGAACTTCGACATAGATCCATGCAGTAACAAACCTAACTGGGCTACACCTAAGCCTACGCCTCTCACTCCCAGATTAAGTATCGTAGAGAACAATGTCACCTGCAACTGCAGTGTTGCTGGTGCCAACTTCTGTCATGTTGTTTCAATAACTTTGAAAGGGCAAAATCTCCCCGGCACTCTCCCACCAGAACTGAACAGGTTGCATTACCTTCAATTTATTGACCTCTCTCGCAATTACTTGAATGGTACAATTCCTAAAGAATGGGGATCCATGACGAATCTTCTTAACATTTCTCTCCCCTCAAATCGATTAACGGGTTCAATACCAGTGGAGATTGCAAATATATCTACTCTGATACAATTGGACTTAACGGCCAATCGAATTTCTAATAATATTCCTCGTGAGCTTGGGGATTTGACCCAGATTCGAGCACTGCGACTTTCCTCAAACAATTTTACTGGAGAACTACCTGCAACATTGGCCAAGCTCACTACATTGCTAAATTTCCAAATTTCTGACAACAACTTCTCTGGAAAGATACCTGATTTTATTCAGAACTGGACAAATATCAATTCGCTATCCGTTCAAGGGAGTGGATTAAGTGGCCCAATTCCTTCTGAAATTTCACTTTTGAGAAACATAACTGACGTGAGAATAAGTGATTTGAATGGATTTGAATATGCACCTTTGCCACAATTTAATAATATGCCATTGTTAAAAAATCTGATTCTGAGGAACTGCAAAATCAATGGGACACTGCATGATTATCTTGGGACTATAGCAACATTAAAACACTTAGACCTCAGCTTTAACAACATAAGTGGAACAATTCCGAGTACCTATGCTGAAACAAACGGTGTGAAATTCATATTTTTAACTGGAAACCTTCTCACTGGATCGTTGCCTGATTGGAGAAGAAACATCGACGTAGATATTTCATACAATAATTTAAGCATGAGCCAAGGGAGTCAGATATGTCAAAGTGATAAAGTGAACTTGTTTTCTCCAACATTGGCACACAATAACATGGGAACAGATTCGTGTTTGAGAGTATGTTCCAAACGTGAGTTTCTTCATGCCTTGTACTCCCTTTATATAAATTGTGGTGGAAACCAAGCAACAGTCAACGGAAAAACTTATAATTATGATTCGGATTCATCTGGACCAGCTAAGTTCCATGTCAGTCCAACAGGAAATTGGGCATTTAGCACCACTGGTATATTCATTGATGGTGATCAACTTGGAGAATTTTATCTCCCGCAAAATGTCACTACACTTACTATGGCAGATTCTGAATTGTACATGACTGCACGTGGTTCTCCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAATGGAAACTACACAGTGAAACTACATTTTGCTGAAATAATGTTCACAGATGATCAAACATATGGTAGTCTAGGAAGGCGGGTATTTGATATCTACCTTCAGGGAAAGGTGGTGCAAAAGGACTTCAATATTGCAGAAGAAGCCGGAGGAGTTGGTAAGAAAGTCATAAAACTGTTCAAAGATGTTGATGTTACTAGTAATACCTTAGAGATCCGCCTGTATTGGGCTGGAAAAGGGACACAGTCTCTCCCAAATAGATCAGTATATGGTCCTATTATATCAGCAATATCTGTGGAATCTGACTCTCCACCTGGAAGCATATCTACAGGAGCTGTGGTTGGAATTGTGGTTGCAGCATCAGTTATTATTATCATTCTAGTATTTGGTTTTCTTTGGTGGAAGGGATGTTTTGGAAAGAAAAACACATTAGCAAGAGAGTTAAATAGTTTAGACGTACAGACGGGTTTATTTACCTTGAGACAAATCAAAGCAGCGACAAATTACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTCAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCTTATCTTGTTAAACTCTACGGTTGCTGTATGGAGGGGGATCAGTTGTTGCTGATATATGAATATTTGGCAAACAATAGTCTAGCTCGTGCTTTATTCGGTCCAGAGGAACACCAAATAAAATTAGATTGGTCTACAAGACAGAAGATTTGTGTTGGCATTGCTAAAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTCCACAGGGACATCAAGGCCACTAATGTATTGCTGGATACGGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTGGACGAGGAGGAAAATACTCACATTAGTACTAGAATTGCTGGGACCTACGGATATATGGCTCCTGAGTATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGCTTTGGAGATCGTTAGTGGAAGGAGCAACACCATGCATCGGGCAAAGGAGGAAGCATTCTATATTCTTGATTGGGCTAATTTGTTGAAAGAGAGAGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGATGATCAATGTAGGTCTTCTATGCACCAATGTAACTTCAACTCTTAGGCCCTCCATGTCGTCAGTTGTAAGTATGCTCGAAGGAAGGACTGTGGTTCCAGAATTTGTTTCAGGTTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAACATTACCATCAGATTGAGGAATCTACAATAACCAAGTCACAAACACAAAGTCAAAGTTTATCAATTGACGGGCCATGGACTGCTTCATCATCATCGACTGTAGATCTTCATCCTATTCGCAATGATTCTTCCCATTGGGAAGAAAGAAAATAA 3054 0.3955 MSTSSQFLLLSLIFIWFISLSAFGATTIHPDEKKALESIAESLGKKDWNFDIDPCSNKPNWATPKPTPLTPRLSIVENNVTCNCSVAGANFCHVVSITLKGQNLPGTLPPELNRLHYLQFIDLSRNYLNGTIPKEWGSMTNLLNISLPSNRLTGSIPVEIANISTLIQLDLTANRISNNIPRELGDLTQIRALRLSSNNFTGELPATLAKLTTLLNFQISDNNFSGKIPDFIQNWTNINSLSVQGSGLSGPIPSEISLLRNITDVRISDLNGFEYAPLPQFNNMPLLKNLILRNCKINGTLHDYLGTIATLKHLDLSFNNISGTIPSTYAETNGVKFIFLTGNLLTGSLPDWRRNIDVDISYNNLSMSQGSQICQSDKVNLFSPTLAHNNMGTDSCLRVCSKREFLHALYSLYINCGGNQATVNGKTYNYDSDSSGPAKFHVSPTGNWAFSTTGIFIDGDQLGEFYLPQNVTTLTMADSELYMTARGSPISLTYYGFCLANGNYTVKLHFAEIMFTDDQTYGSLGRRVFDIYLQGKVVQKDFNIAEEAGGVGKKVIKLFKDVDVTSNTLEIRLYWAGKGTQSLPNRSVYGPIISAISVESDSPPGSISTGAVVGIVVAASVIIIILVFGFLWWKGCFGKKNTLARELNSLDVQTGLFTLRQIKAATNYFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCMEGDQLLLIYEYLANNSLARALFGPEEHQIKLDWSTRQKICVGIAKGLAYLHEESRLKVVHRDIKATNVLLDTDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTMHRAKEEAFYILDWANLLKERGDLMELVDRRLGSDFNKKEAMVMINVGLLCTNVTSTLRPSMSSVVSMLEGRTVVPEFVSGSSEVMDEKKLEVMRQHYHQIEESTITKSQTQSQSLSIDGPWTASSSSTVDLHPIRNDSSHWEERK 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02348 1017 Pfam Malectin domain 411 596 IPR021720 -
Trre12g02348 1017 ProSiteProfiles Protein kinase domain profile. 669 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02348 1017 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 979 - -
Trre12g02348 1017 CDD STKc_IRAK 675 942 - -
Trre12g02348 1017 MobiDBLite consensus disorder prediction 974 1006 - -
Trre12g02348 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Trre12g02348 1017 FunFam Putative LRR receptor-like serine/threonine-protein kinase 745 951 - -
Trre12g02348 1017 Gene3D Phosphorylase Kinase; domain 1 637 744 - -
Trre12g02348 1017 SMART serkin_6 669 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02348 1017 Gene3D Transferase(Phosphotransferase) domain 1 745 951 - -
Trre12g02348 1017 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 409 601 - -
Trre12g02348 1017 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 204 - -
Trre12g02348 1017 Gene3D - 410 601 - -
Trre12g02348 1017 Gene3D Ribonuclease Inhibitor 31 204 IPR032675 -
Trre12g02348 1017 SUPERFAMILY Protein kinase-like (PK-like) 651 951 IPR011009 -
Trre12g02348 1017 Pfam Protein kinase domain 671 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02348 1017 MobiDBLite consensus disorder prediction 973 1017 - -
Trre12g02348 1017 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 205 271 - -
Trre12g02348 1017 Gene3D Ribonuclease Inhibitor 274 395 IPR032675 -
Trre12g02348 1017 Gene3D Ribonuclease Inhibitor 205 273 IPR032675 -
Trre12g02348 1017 SUPERFAMILY L domain-like 71 411 - -
Trre12g02348 1017 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 638 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02348 Trre-Chr12 27021509 27030058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02348 25 978 Receptor kinase-like Gene Family AT1G53420 52.322 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02348 Pkinase 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02348 - - gmx:732563 1286.17