Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02334 ATGAGCACATCCTCTCAATTTCTCATCCTTTCACTCATTGCCATTTCGTTCATATGTCTAACAGCTTTTGCTGCTAATATTATTCACCCAGATGAAAAGAAAGCTCTTGAAGATATAGCTAACTCAATTGGTAAGAAGGATTGGAACTTCGATACAGATCCTTGCACTAACAAACCAAACTGGCTTACAAAGTTAGAGAACAATGTCACCTGTAACTGCTCTGTGGCTGGTGACAAATTCTGCCATGTTGTTGCAATAACTTTGAAAGAGCAAAATCTTCCCGGCACTCTACCACCAGAACTGAACAGGTTGCCTTACCTTCAAATTATTGACCTCTCTCGCAATTACTTGAACGGTACAATTCCTAAAGAATGGGCCTCCATGACAAATCTTCTTAACATTACTCTCTCCAGCAATAGATTAACTGGTTCAATACCGGCGGAGATTGCAAACATTTCTACTCTGATACAGTTAGACTTAACGGCCAATCAAATGTCTGGAAATATTCCACCTGAGCTTGGGAGTCTAACTCAGATTCGAACACTGCAACTTTCCTCTAACAATTTTACTAGAGAACTACCTGTGACGTTGGCCAAGCTCACTGCATTGCAAGATTTCCGAATTGCGGACAACCAATTGTCTGGAAAGATACCTGATTTTATTCAAAATTGGACAAATATCAATACACTAGTCATTCAAGGGAGTGGATTAAGCGGGCCAATTCCTTCTAAAATTTCACTTTTGAGAAACTTGGTTGAATTGAGAATTAGTGATTTGAATGGATCCGAATATGCACCTTTGCCGCAACTTCAAAATATGACATTGTTAAACAGACTGATTCTGAGGAATTGCAACATCAATGGAAAACTACCTGAATATATTGTGAAAATGGCAACATTAAAACACATAGACCTCAGCTTTAACAAATTAAGTGGAACAATTCCAAGGACCTATGCTGACATGAGCAATGCGAATTACATATTTTTAACTGGAAACCTTCTCACTGGACCAGTGTCTCCTGTTTGGGGAAAGAATTCTGACGTAGATCTATCGTACAATAACTTCAGCATTAGCCAAGGGAGTCAGATATGTCAAGATGAAAAAGTGAACTTGTTTTCTACTTCATGGGCACGCAATGACATAGGAGATTCGTGTTTGAGCTTTGAATGTCGCAAACACTCATACTCCCTTCATATAAATTGCGGTGGAAATCAAGCAACAGTCAACAAAACAAGTTATGTTGGTGATTCAGATTCATCTAGACCAGCTAGATTTGATGTTAGTTCAACAGGAAATTGGGCCTTTAGCAGCACCGGTCAATTCGTTGATAGTGATCTACTTGGAAAAACATTTTCCCCGCAAAGTATCTCTAAACTTACTATGGTGGATTCTGAATTGTACACGAATGCACGTGTTTCTCCTATTTCTTTGACTTATTATGGGTTTTGCCTCGCAAATGGAAGCTACACTGTAAATCTACATTTTGCTGAAATAATGTTCACAGACGATCAAACTTATAGTAGTCTTGGAAGGCGTGTATTTGATATCTATCTTCAGGGAAATCAGGTGCTAAAGGACTTCAATATTGCAGAAGAAGCGGGAGGAGTTGGTAAGAAGGTCGTAAAATTGTTCAAAGATGTTGCTGTTACTAGTAATACTTTGGAGATCCGGTTATATTGGGCCGGAAAAGGGACAGAATATCTCCCAAATAAATCAGTATATGGTCCTCTTATATCAGCTATATCAGTGGAATCTGATTCTGCACCTGGAAGCATATCTGTAGGAGTTGTGGCTGGAATTGTGGTTGCAGCAACAGTTACTATCATTCTATTATTTGAGCTGAAGAATTTAGACCTTCAAACTGGTTTATTTACTTTAAGACAAATCAGAGCAGCAACAAACAACTTTGATATTTCAAATAAGATTGGAGAAGGAGGGTTTGGTCCTGTGTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTCAAACAACTTTCATCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATTGGCATGATTTCTGCTTTGCAACACCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACCTGGAAAACAATAGTCTTGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATAAGATTAGATTGGTCAACAAGGAAGAAGATATGTGTTGGTATTGCTAGAGGTTTGGCATACCTTCATGAAGAATCAAGACTGAAGGTTGTTCATAGGGACATCAAATCCACTAATGTGTTACTTGATACGGATCTCGGCCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACTAGAATTGCTGGAACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTACTTAACGGACAAGGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAGATCGTTAGTGGAAGGAGCAACACCATGCATCGGTCAATGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTATTGAAAGAGAGAGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGTTACAGCGATGATCAACGTTGCTCTCCTATGCACCAATGCCACTTCAAACCTTAGGCCATCTATGTCATCAGTCGTAAGTATGCTTGAGTTAAGGACCGTGGTTCCAGAATTTGTTTCAGATTCTAGTGAAGTAATGGATGAACAGAAGATGGAATCAATGAGGCGGCATTACTATAAGATGGAAGAAAATAAGGTAAGTCAGTTACAAACACAAAGTGAGAGTTCCTCAAATGATGGACCATGGACAGCTACATCTTCATCAGCTGTAGACCTTTATCCTGTCCAACTTGATTCTTCCTATTGGGAGAAAAGATATTGA 2955 0.3905 MSTSSQFLILSLIAISFICLTAFAANIIHPDEKKALEDIANSIGKKDWNFDTDPCTNKPNWLTKLENNVTCNCSVAGDKFCHVVAITLKEQNLPGTLPPELNRLPYLQIIDLSRNYLNGTIPKEWASMTNLLNITLSSNRLTGSIPAEIANISTLIQLDLTANQMSGNIPPELGSLTQIRTLQLSSNNFTRELPVTLAKLTALQDFRIADNQLSGKIPDFIQNWTNINTLVIQGSGLSGPIPSKISLLRNLVELRISDLNGSEYAPLPQLQNMTLLNRLILRNCNINGKLPEYIVKMATLKHIDLSFNKLSGTIPRTYADMSNANYIFLTGNLLTGPVSPVWGKNSDVDLSYNNFSISQGSQICQDEKVNLFSTSWARNDIGDSCLSFECRKHSYSLHINCGGNQATVNKTSYVGDSDSSRPARFDVSSTGNWAFSSTGQFVDSDLLGKTFSPQSISKLTMVDSELYTNARVSPISLTYYGFCLANGSYTVNLHFAEIMFTDDQTYSSLGRRVFDIYLQGNQVLKDFNIAEEAGGVGKKVVKLFKDVAVTSNTLEIRLYWAGKGTEYLPNKSVYGPLISAISVESDSAPGSISVGVVAGIVVAATVTIILLFELKNLDLQTGLFTLRQIRAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIRLDWSTRKKICVGIARGLAYLHEESRLKVVHRDIKSTNVLLDTDLGPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTMHRSMEEAFYLLDWAHLLKERGDLMELVDRRLGSDFNKKEVTAMINVALLCTNATSNLRPSMSSVVSMLELRTVVPEFVSDSSEVMDEQKMESMRRHYYKMEENKVSQLQTQSESSSNDGPWTATSSSAVDLYPVQLDSSYWEKRY 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02334 984 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 394 586 - -
Trre12g02334 984 SMART serkin_6 636 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02334 984 Pfam Protein kinase domain 638 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02334 984 SUPERFAMILY L domain-like 79 355 - -
Trre12g02334 984 Gene3D Transferase(Phosphotransferase) domain 1 712 918 - -
Trre12g02334 984 CDD STKc_IRAK 642 908 - -
Trre12g02334 984 ProSiteProfiles Protein kinase domain profile. 636 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02334 984 SUPERFAMILY Protein kinase-like (PK-like) 619 917 IPR011009 -
Trre12g02334 984 FunFam Putative LRR receptor-like serine/threonine-protein kinase 712 919 - -
Trre12g02334 984 Gene3D Ribonuclease Inhibitor 264 376 IPR032675 -
Trre12g02334 984 MobiDBLite consensus disorder prediction 943 964 - -
Trre12g02334 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 758 770 IPR008271 GO:0004672|GO:0006468
Trre12g02334 984 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 609 711 - -
Trre12g02334 984 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 194 260 - -
Trre12g02334 984 Pfam Malectin domain 396 581 IPR021720 -
Trre12g02334 984 Gene3D Ribonuclease Inhibitor 194 263 IPR032675 -
Trre12g02334 984 Gene3D Ribonuclease Inhibitor 30 193 IPR032675 -
Trre12g02334 984 Gene3D Phosphorylase Kinase; domain 1 604 711 - -
Trre12g02334 984 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 20 950 - -
Trre12g02334 984 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 193 - -
Trre12g02334 984 Gene3D - 392 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02334 Trre-Chr12 26745087 26752167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02334 20 956 Receptor kinase-like Gene Family AT1G53420 52.784 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02334 Pkinase 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02334 - - gmx:732563 1226.85