Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02333 ATGAGCACATCCTCTCAATTTCTCATCCTTTCACTCATTGCCATTTCGTTCATATGTCTAACAGCTTTTGCTGCTAATATTATTCACCCAGATGAAAAGAAAGCTCTTGAAGATATAGCTAACTCAATTGGTAAGAAGGATTGGAACTTCGATACAGATCCTTGCACTAACAAACCAAACTGGCTTACAAAGTTAGAGAACAATGTCACCTGTAACTGCTCTGTGGCTGGTGACAAATTCTGCCATGTTGTTGCAATAACTTTGAAAGAGCAAAATCTTCCCGGCACTCTACCACCAGAACTGAACAGGTTGCCTTACCTTCAAATTATTGACCTCTCTCGCAATTACTTGAACGGTACAATTCCTAAAGAATGGGCCTCCATGACAAATCTTCTTAACATTACTCTCTCCAGCAATAGATTAACTGGTTCAATACCGGCGGAGATTGCAAACATTTCTACTCTGATACAGTTAGACTTAACGGCCAATCAAATGTCTGGAAATATTCCACCTGAGCTTGGGAGTCTAACTCAGATTCGAACACTGCAACTTTCCTCTAACAATTTTACTAGAGAACTACCTGTGACGTTGGCCAAGCTCACTGCATTGCAAGATTTCCGAATTGCGGACAACCAATTGTCTGGAAAGATACCTGATTTTATTCAAAATTGGACAAATATCAATACACTAGTCATTCAAGGGAGTGGATTAAGCGGGCCAATTCCTTCTAAAATTTCACTTTTGAGAAACTTGGTTGAATTGAGAATTAGTGATTTGAATGGATCCGAATATGCACCTTTGCCGCAACTTCAAAATATGACATTGTTAAACAGACTGATTCTGAGGAATTGCAACATCAATGGAAAACTACCTGAATATATTGTGAAAATGGCAACATTAAAACACATAGACCTCAGCTTTAACAAATTAAGTGGAACAATTCCAAGGACCTATGCTGACATGAGCAATGCGAATTACATATTTTTAACTGGAAACCTTCTCACTGGACCAGTGTCTCCTGTTTGGGGAAAGAATTCTGACGTAGATCTATCGTACAATAACTTCAGCATTAGCCAAGGGAGTCAGATATGTCAAGATGAAAAAGTGAACTTGTTTTCTACTTCATGGGCACGCAATGACATAGGAGATTCGTGTTTGAGCTTTGAATGTCGCAAACACTCATACTCCCTTCATATAAATTGCGGTGGAAATCAAGCAACAGTCAACAAAACAAGTTATGTTGGTGATTCAGATTCATCTAGACCAGCTAGATTTGATGTTAGTTCAACAGGAAATTGGGCCTTTAGCAGCACCGGTCAATTCGTTGATAGTGATCTACTTGGAAAAACATTTTCCCCGCAAAGTATCTCTAAACTTACTATGGTGGATTCTGAATTGTACACGAATGCACGTGTTTCTCCTATTTCTTTGACTTATTATGGGTTTTGCCTCGCAAATGGAAGCTACACTGTAAATCTACATTTTGCTGAAATAATGTTCACAGACGATCAAACTTATAGTAGTCTTGGAAGGCGTGTATTTGATATCTATCTTCAGGGAAATCAGGTGCTAAAGGACTTCAATATTGCAGAAGAAGCGGGAGGAGTTGGTAAGAAGGTCGTAAAATTGTTCAAAGATGTTGCTGTTACTAGTAATACTTTGGAGATCCGGTTATATTGGGCCGGAAAAGGGACAGAATATCTCCCAAATAAATCAGTATATGGTCCTCTTATATCAGCTATATCAGTGGAATCTGATTCTGCACCTGGAAGCATATCTGTAGGAGTTGTGGCTGGAATTGTGGTTGCAGCAACAGTTACTATCATTCTATTATTTGGTATACTTTGGTGGAAAGGATGTTTTGAAAAGAAAAACTCACTGGCAAGAGAGCTGAAGAATTTAGACCTTCAAACTGGTTTATTTACTTTAAGACAAATCAGAGCAGCAACAAACAACTTTGATATTTCAAATAAGATTGGAGAAGGAGGGTTTGGTCCTGTGTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTCAAACAACTTTCATCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATTGGCATGATTTCTGCTTTGCAACACCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACCTGGAAAACAATAGTCTTGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATAAGATTAGATTGGTCAACAAGGAAGAAGATATGTGTTGGTATTGCTAGAGGTTTGGCATACCTTCATGAAGAATCAAGACTGAAGGTTGTTCATAGGGACATCAAATCCACTAATGTGTTACTTGATACGGATCTCGGCCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACTAGAATTGCTGGAACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTACTTAACGGACAAGGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAGATCGTTAGTGGAAGGAGCAACACCATGCATCGGTCAATGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTATTGAAAGAGAGAGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGTTACAGCGATGATCAACGTTGCTCTCCTATGCACCAATGCCACTTCAAACCTTAGGCCATCTATGTCATCAGTCGTAAGTATGCTTGAGTTAAGGACCGTGGTTCCAGAATTTGTTTCAGATTCTAGTGAAGTAATGGATGAACAGAAGATGGAATCAATGAGGCGGCATTACTATAAGATGGAAGAAAATAAGGTAAGTCAGTTACAAACACAAAGTGAGAGTTCCTCAAATGATGGACCATGGACAGCTACATCTTCATCAGCTGTAGACCTTTATCCTGTCCAACTTGATTCTTCCTATTGGGAGAAAAGATATTGA 3006 0.3902 MSTSSQFLILSLIAISFICLTAFAANIIHPDEKKALEDIANSIGKKDWNFDTDPCTNKPNWLTKLENNVTCNCSVAGDKFCHVVAITLKEQNLPGTLPPELNRLPYLQIIDLSRNYLNGTIPKEWASMTNLLNITLSSNRLTGSIPAEIANISTLIQLDLTANQMSGNIPPELGSLTQIRTLQLSSNNFTRELPVTLAKLTALQDFRIADNQLSGKIPDFIQNWTNINTLVIQGSGLSGPIPSKISLLRNLVELRISDLNGSEYAPLPQLQNMTLLNRLILRNCNINGKLPEYIVKMATLKHIDLSFNKLSGTIPRTYADMSNANYIFLTGNLLTGPVSPVWGKNSDVDLSYNNFSISQGSQICQDEKVNLFSTSWARNDIGDSCLSFECRKHSYSLHINCGGNQATVNKTSYVGDSDSSRPARFDVSSTGNWAFSSTGQFVDSDLLGKTFSPQSISKLTMVDSELYTNARVSPISLTYYGFCLANGSYTVNLHFAEIMFTDDQTYSSLGRRVFDIYLQGNQVLKDFNIAEEAGGVGKKVVKLFKDVAVTSNTLEIRLYWAGKGTEYLPNKSVYGPLISAISVESDSAPGSISVGVVAGIVVAATVTIILLFGILWWKGCFEKKNSLARELKNLDLQTGLFTLRQIRAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIRLDWSTRKKICVGIARGLAYLHEESRLKVVHRDIKSTNVLLDTDLGPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTMHRSMEEAFYLLDWAHLLKERGDLMELVDRRLGSDFNKKEVTAMINVALLCTNATSNLRPSMSSVVSMLELRTVVPEFVSDSSEVMDEQKMESMRRHYYKMEENKVSQLQTQSESSSNDGPWTATSSSAVDLYPVQLDSSYWEKRY 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02333 1001 Gene3D Transferase(Phosphotransferase) domain 1 729 935 - -
Trre12g02333 1001 FunFam Putative LRR receptor-like serine/threonine-protein kinase 729 936 - -
Trre12g02333 1001 SMART serkin_6 653 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02333 1001 MobiDBLite consensus disorder prediction 960 981 - -
Trre12g02333 1001 SUPERFAMILY L domain-like 79 355 - -
Trre12g02333 1001 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 20 967 - -
Trre12g02333 1001 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 193 - -
Trre12g02333 1001 Gene3D - 392 587 - -
Trre12g02333 1001 Gene3D Ribonuclease Inhibitor 194 263 IPR032675 -
Trre12g02333 1001 Gene3D Ribonuclease Inhibitor 30 193 IPR032675 -
Trre12g02333 1001 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 622 728 - -
Trre12g02333 1001 Pfam Malectin domain 396 581 IPR021720 -
Trre12g02333 1001 ProSiteProfiles Protein kinase domain profile. 653 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02333 1001 Gene3D Phosphorylase Kinase; domain 1 619 728 - -
Trre12g02333 1001 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 194 260 - -
Trre12g02333 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 775 787 IPR008271 GO:0004672|GO:0006468
Trre12g02333 1001 SUPERFAMILY Protein kinase-like (PK-like) 636 934 IPR011009 -
Trre12g02333 1001 Gene3D Ribonuclease Inhibitor 264 376 IPR032675 -
Trre12g02333 1001 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 394 586 - -
Trre12g02333 1001 CDD STKc_IRAK 659 925 - -
Trre12g02333 1001 Pfam Protein kinase domain 655 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02333 Trre-Chr12 26745087 26752167 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02333 20 973 Receptor kinase-like Gene Family AT1G53420 53.505 0.0 987
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02333 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02333 - - gmx:732563 1269.6