Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02332 ATGGAAAGTATGCGAGAAACTTATTCCCCGCAAAATAGCACCAAACTTACTATGGTGGATGCTGAATTGTACATGAACGCACGTGTTTCTCCTATTTCTTTGACTTATTATGGGTTTTGCCTAGCAAATGGAAGCTACACAGTAAATCTACATTTTGCTGAAATAATGTTCACAGACGATCAAACTTTTCGTAGTCTTGGAAGGCGTATATTCGATATCTACCTTCAGGGAAAGAGGGTGCAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGAAAGAAGGTCATAAAACAGTTCAATGATGTTGTTGTTACTAGTAATACTTTGGAGATCCGCTTATATTGGGCTGGAAAAGGGACAATGGCTATCCCAAGTAAATCAGCTTATGGTCCTCTTATATCAGCTATATCAGTGGAATCTGATTCTCCACCTGGAAGCATATCTGCAGGAGCCGTGGCTGGAATTGTGGTTGCAGCAATAATTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACGCATTAGAAAGAGACCTGAAGAGTTTAGACCTACAAACGGGTTTATTTACCTTGAGACAAATCAAAGCAGCAACAAACAACTTTCATATTTCCAATAAGATTGGAGAAGGAGGGTTTGGTCCTGTGTACAAGGGATGTTTATCCAATGGGACCTTGATAGCAGTCAAACAACTTTCTTCTAAATCAAGGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGAGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTCTAGCTCGAGCTTTATTTGGTCCAGAGGAACACCAAATAAAATTAGATTGGTCAACAAGGCAGAAGATTTGTGTTGGCATTGCTAAAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCATAGGGACATCAAGGCCACTAATGTGTTGCTTGATACGGATCTAGTTCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAAAACTCACATTAGCACTAAAATTGCTGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACAGACAAAGCAGATGTTTATAGTTTTGGAATTGTTTCCTTGGAAATCGTTAGTGGAAGGAGCAACACTCTTTATCGGTCAAAAGAGGAAGCATTCTATCTTCTTGATTGGGCACATATGTTGAAAGAGAAAGGTGACCTAATGGAAGTAGTTGACAGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGATGATCGATGTGGCTCTCCTATGCACCAATGTCACTTCAAACCTTAGGCCCTCTATGTCGTCAGTTGTAAGTATGCTTGAAGGAACGACAGTGGTTCCAGAATTTGTTTCGGATTCAAGTGAAGTAATGGATGAAAAGAAGTGTGTAGATCTTTATCCTGTCCAAAGTGATTCTTCCTATTGGGAGAAAAGAAATTAA 1563 0.3909 MESMRETYSPQNSTKLTMVDAELYMNARVSPISLTYYGFCLANGSYTVNLHFAEIMFTDDQTFRSLGRRIFDIYLQGKRVQKDFNIAEEAGGVGKKVIKQFNDVVVTSNTLEIRLYWAGKGTMAIPSKSAYGPLISAISVESDSPPGSISAGAVAGIVVAAIIIIILVFGILWWKGCFGKKNALERDLKSLDLQTGLFTLRQIKAATNNFHISNKIGEGGFGPVYKGCLSNGTLIAVKQLSSKSRQGNREFLNEIGMISALQHPYLVKLYGCCVERDQLLLIYEYLENNSLARALFGPEEHQIKLDWSTRQKICVGIAKGLAYLHEESRLKVVHRDIKATNVLLDTDLVPKISDFGLAKLDEEDKTHISTKIAGTYGYMAPEYAMHGYLTDKADVYSFGIVSLEIVSGRSNTLYRSKEEAFYLLDWAHMLKEKGDLMEVVDRRLGSDFNKKEAMVMIDVALLCTNVTSNLRPSMSSVVSMLEGTTVVPEFVSDSSEVMDEKKCVDLYPVQSDSSYWEKRN 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02332 520 SMART serkin_6 210 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02332 520 Pfam Malectin domain 10 138 IPR021720 -
Trre12g02332 520 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 179 285 - -
Trre12g02332 520 Gene3D - 2 143 - -
Trre12g02332 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 332 344 IPR008271 GO:0004672|GO:0006468
Trre12g02332 520 Pfam Protein tyrosine and serine/threonine kinase 211 481 IPR001245 GO:0004672|GO:0006468
Trre12g02332 520 SUPERFAMILY Protein kinase-like (PK-like) 193 492 IPR011009 -
Trre12g02332 520 ProSiteProfiles Protein kinase domain profile. 210 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02332 520 Gene3D Transferase(Phosphotransferase) domain 1 286 499 - -
Trre12g02332 520 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 6 500 - -
Trre12g02332 520 Gene3D Phosphorylase Kinase; domain 1 179 285 - -
Trre12g02332 520 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 143 - -
Trre12g02332 520 FunFam Putative LRR receptor-like serine/threonine-protein kinase 286 493 - -
Trre12g02332 520 CDD STKc_IRAK 216 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02332 Trre-Chr12 26718108 26721175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02332 12 487 Receptor kinase-like Gene Family AT1G53420 66.250 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02332 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02332 - - gmx:732563 775.007