Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02325 ATGAGCACTTCTTCCCAATTTCTCTTCCTTTCACTAATTGTGATTTGGTTCATATCTCTAACAGCTTTTGCTGCTACTACTATTCACCCCGATGAAAAGAATGCTCTCAAAGATATAGCTAAGTCACTTGGTAAGAAGGGTTGGAACATCGACATAGATCCATGCAGCAACAACGAATCTAACGGGGATATGCCTACGGCTGATACTCCCAGTTCGAGAATCGTAGTGAGCAATGTTTCCTGTAACTGCTTTGTTCCTGGTGACAACTTCTGCCATGTTGTTTCAATAACTTGGAAAGGGCAAAATCTCCCGGGCACTCTCCCACCGGAATTGAACAGGTTGCGTTACCTTCAAATTATTGATCTCTCTCGCAATTACTTGAATGGTACAATTCCTAAAGAATGGGGCTCCATGACGAATCTTCTTAACATTACTCTTCCATCAAATCGATTAACGGGTTCAATACCAGTGGAGATTGCAAATATATCTACTCTGATACAATTGGAATTAACGGCCAACCAAATGTCTGGAAATATTCCTCCTGAGCTTGGGAATTTGACCCAGATTCGAACACTGCGACTTTCCTCTAACAATTTTACTGGAGAACTACCTGCAACACTGGCCAAGCTCACTACATTACTAGATTTCCAAATTTCGGACAACCAATTCTCTGGAAAGATACCTGATTTTATTCAGAACTGGACAAATATCAATTTGCTATTCATTCAAGGGAGTGGATTAAGTGGGCCAATTCCTTCTGAAATTTCACTTTTGAAAAACTTAACTGACTTGAGAATTAGTGATTTGAATGGATTTGAATATGCACCTTTGCCCCTGTTTAATAATACGCCATTGTTAAAAAATCTGATTCTGAGGAACTGCAAAATCAATGGGAAACTGCATGATTATTTTGGGACTATAACAACATTAAAACGCTTAGACCTCAGCTTTAACAACATAAGTGGAACAATTCCGAGTACCTCTGCTGTCATGAACGATGTGAAATTCATATTTTTAACTGGAAACCTTCTCACTGGATCATTACCTACTTGGAAAAAGGACATCGACGTTGATGTTTCATACAATAACTTAAGCATCAGCCAAGGGAGTCAGATTTGTCAAAGTGGAAGATTGAACTTGTTTTCTCCGACATTGGCATACAATAACATAGGAACAGTTTCGTGTTTGAGAAAATGTCTCAAATACTCGTACTCCCTTCATATAAATTGTGGTGGAACACAAGTAACAGGTTATGATGATGATTCAGAGCCATCTGGACCAGCTAAATTCTATGTCAGTCAAAAAGAAAATTGGGGATTTAGCACCACTGGTACATTCATTGATGGTGATCAACTTGGGGAAACTTATCTCCCGCAAAATATCACTACACTTACTATGCCGGATGCTGAATTGTACATGAAAGCACGTGGTTCTCCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAATGGAAGCTACACAGTTAAACTACATTTTGCTGAAATAATGTTCACAGATGATCAAACTTATGGTAGTCTCGGAAGGCGTGTATTTGATATCTACCTTCAGGGAATGCTAATGAAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAGTCATAAAACAGTTCAAAGATGTTGATGTTACTAGTAATACCTTGGAAATCCGCCTGTATTGGGCTGGAAAAGGGACACAATCTCTCCCAAATAGATCAGTATATGGTCCTATTATATCAGCAATATCTGTGGAATCTGACTCTCCGCCTGGAAGCCTATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCAGCAGCAATTGTTATCATTCTACTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAATTCTCATTAGCAAGAGAGCTGGAGAGTTTAGAACTACAAACAGGTTTATTTACCTTAAGGCAAATCAAAGCAGCAACAAATAACTTTGATATCTCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTATACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTCAAGCAACTTTCTTCTAAATCAAGGCAAGGGAATCGTGAATTTTTAAATGAGATTGGCATGATTTCGGCTTTGCAACACCCTTATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGACCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTCTAGCTCGTGCTTTATTTGGTCCAGAAGAACACCGAATAAGATTAGATTGGTCAACAAGGAAGAAGATATGTGTTGGTATTGCTAGAGGTTTGGCATATCTCCATGAAGAATCAAGATTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTGTTACTTGATACGGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTGGACGAGGAGGACAATACTCACATTAGTACTAGAATTGCTGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACAGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATCGTCTGTGGAAGGACCAACACCATTTATCGGTCAAAGAAGGAAGCATTGTATCTTCTTGAATGGGCACATACGTTGAAAGAGAAAGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGTTCAGATTTCAACAGAAAGGAAGCTATGATGGTGATCAATGTGGCTCTTCTATGCACTAATTTCACTTCAAACCTTAGGCCGGCTATGTCGTCAGTGGTAAGTATGCTTGAAGGAAGGACTGTGGTTCCAGAATTTGTGCCAGATTCAAGTGAAGTTATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTATGAGATGGAAGAAGATAATACAAGTAAGTCACAAACACAAAGTCAGAATTTATCAATTGATGGGACATGGACTGCTTCATCTTCATCAGCTGTAGACCTTTACCCCATCCAACTTGATTCTTCCTATTGGGAGGAAAAAAAATTAAGAATGTGTTAG 3033 0.3914 MSTSSQFLFLSLIVIWFISLTAFAATTIHPDEKNALKDIAKSLGKKGWNIDIDPCSNNESNGDMPTADTPSSRIVVSNVSCNCFVPGDNFCHVVSITWKGQNLPGTLPPELNRLRYLQIIDLSRNYLNGTIPKEWGSMTNLLNITLPSNRLTGSIPVEIANISTLIQLELTANQMSGNIPPELGNLTQIRTLRLSSNNFTGELPATLAKLTTLLDFQISDNQFSGKIPDFIQNWTNINLLFIQGSGLSGPIPSEISLLKNLTDLRISDLNGFEYAPLPLFNNTPLLKNLILRNCKINGKLHDYFGTITTLKRLDLSFNNISGTIPSTSAVMNDVKFIFLTGNLLTGSLPTWKKDIDVDVSYNNLSISQGSQICQSGRLNLFSPTLAYNNIGTVSCLRKCLKYSYSLHINCGGTQVTGYDDDSEPSGPAKFYVSQKENWGFSTTGTFIDGDQLGETYLPQNITTLTMPDAELYMKARGSPISLTYYGFCLANGSYTVKLHFAEIMFTDDQTYGSLGRRVFDIYLQGMLMKKDFNIAEEAGGVGKKVIKQFKDVDVTSNTLEIRLYWAGKGTQSLPNRSVYGPIISAISVESDSPPGSLSAGAVVGIVVAAAIVIILLFGILWWKGCFGKKFSLARELESLELQTGLFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSRQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEHRIRLDWSTRKKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDTDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVCGRTNTIYRSKKEALYLLEWAHTLKEKGDLMELVDRRLGSDFNRKEAMMVINVALLCTNFTSNLRPAMSSVVSMLEGRTVVPEFVPDSSEVMDEKKLEVMRQYYYEMEEDNTSKSQTQSQNLSIDGTWTASSSSAVDLYPIQLDSSYWEEKKLRMC 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02325 1010 Gene3D Transferase(Phosphotransferase) domain 1 734 938 - -
Trre12g02325 1010 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 966 - -
Trre12g02325 1010 SUPERFAMILY Protein kinase-like (PK-like) 641 949 IPR011009 -
Trre12g02325 1010 ProSiteProfiles Protein kinase domain profile. 658 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02325 1010 Pfam Malectin domain 405 586 IPR021720 -
Trre12g02325 1010 SUPERFAMILY L domain-like 88 355 - -
Trre12g02325 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Trre12g02325 1010 Gene3D Ribonuclease Inhibitor 273 375 IPR032675 -
Trre12g02325 1010 Gene3D Ribonuclease Inhibitor 32 203 IPR032675 -
Trre12g02325 1010 Gene3D Ribonuclease Inhibitor 204 272 IPR032675 -
Trre12g02325 1010 SMART serkin_6 658 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02325 1010 FunFam Putative LRR receptor-like serine/threonine-protein kinase 734 941 - -
Trre12g02325 1010 Pfam Protein kinase domain 660 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02325 1010 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 204 270 - -
Trre12g02325 1010 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 627 733 - -
Trre12g02325 1010 CDD STKc_IRAK 664 931 - -
Trre12g02325 1010 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 203 - -
Trre12g02325 1010 Gene3D - 401 591 - -
Trre12g02325 1010 Gene3D Phosphorylase Kinase; domain 1 628 733 - -
Trre12g02325 1010 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 403 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02325 Trre-Chr12 26605436 26613717 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02325 20 973 Receptor kinase-like Gene Family AT1G53420 53.965 0.0 973
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02325 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02325 - - gmx:732563 1265.37