Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02320 ATGTTTTTTCTCATGTCAAGAAGCTTCAAACATGTATCTTTGTTCTTCTTTTTGTTCATTGCTTTCTCAATATTTAGATCCAACGCTCAACTCTTACCACAAGATGAAGTGAAATTGCTACAAACAATATCAGACAAAGTACATAATTTGAATTGGAAGGTTACACAACGTTCTTGCAATAATGGGGATAGTGGATTTGGTAACAAGATTATTGTAAAGGATCAAATTACAAGAAATGTCACGTGTGATTGTTCTTTCAATGCTAGCACTATTTGCCATGTAACAATGATATTGCTGAAGGGTCTCAATATATCTGGAGTTTTTCCTAGTGAATTTGGAAATCTCACTCAACTCAAAATACTTGATCTAACTCGGAATTATCTAAATGGTTCAATTCCAAAGAGTCTTGGACGCCTCCCACTTGTGACAATGTCATTTTTGGGAAATCGACTTAGTGGTCAAATTCCCTCAGAAATTGGTGATATTGTCACCCTGCAAGAACTGAATTTTGAGGATAATCGTCTTGAAGGGCCTCTTCCTTCCAGCCTCGGAAATTTGAAGAACTTGCAAAAATTCATGCTTTCTGCAAATAATTTTACAGGACCAATACCAGAAGCATTTGGAAATCTTAAGAATCTTACTCAATTTAGGATCGATGGAAGCAGTTTATCCGGAAAGATCCCGAGTTTTATCGGAAACTGGACGAAAATTGAAAGATTGGATTTGCAAGGTACATCCATGGAAGGTCCAATTCCTCCTGCTATATCTCTCTTGAAAAATTTGAAGGAATTGAGAATATCTGATTTGAAGGGACAAACAACGACAAAATTTCCTGATCTGAAGGATTTGAAACGCATGGTTAGACTGGAATTGAGAAATTGCTTAATCACCGGTCCTATTCCGGACTACATCGGTGAACTGGAAAGTTTAAAAACTATAGATTTGAGCTCCAATAGATTGACCGGTCCAATTCCAGATTCACTTCAGGACTTGGAGTTCGAATCTCTTAACTTCGTGTTTCTTACTAACAACTCTCTGAGTGGAACAATTCCTGGATGGATAGTGAGCAACAAACAGAACTTTGATTTATCTTTCAACAATTTTACCGACGCTGCTACATCTAGTTGCCAGCCCTTGGATGTGAACTTAGCTTCCAGCGTCTCTCCTTCATCAAACACTACATTAACTTGTTTGAAGATGAACCTACCTTGTTCGGGAAAACCTCGGTATCATTCACTGTTCATAAATTGTGGAGGACCTGCAACTGAGTTTTACGGCAATGAATATGAAGCCGATGGACATTTACGTGGAATTTCGAACTTTTTTCCTAGTGATGATGGAAAATGGGCTTATAGCAGCACAGGAGTATTTCTCGGAAATGAAAGAGCTGATTATGTGGCAAGCAATGCATTCTCTTTGAATATCAATGGCTCTGAATACTACCAAACCGCTCGCATTGCACCGATATCTCTTAAATACTTTGGCCTTTGTATGATGAAAGGAAATTATAATGTGAAACTTCATTTTGCTGAGATAATGTTTTCTAATGACCAGACATATAGCAGCCTTGGAAGGCGCATATTCGATGTTTCAATTCAAGGTTTTAAATATTTGAAAGATTTTAACATTATGGAAGCAGCTGGTGGAGTTGGCAAGGGAATCACTAAGGAGTTTAATGTTGATGTTAATCAAAGCACTTTGGAAATCCACTTATCTTGGGCAGGGAAAGGAACTAATGCCATTCCTATGAGAGGTGTATATGGACCTCTTATATCTGCTATCACTGTCACACCAAACTTTAAAATTCCTTCAAATGGGTTGTCTGCTGGAGCGATTGTTGGTATTGTGGTCGGATCATTGGCGCTTATCATTCTTATACTCTTTGTCCTTTGGAAGATGGGTTATATCTTTAGGAAGGATCAAACAGACAAAGAGCTCCTAGAATTAAAAACAGGTTATTATAGTTTGAGACAAATTAAAGCTGCTACTAATAACTTTGATCCAGTGAATAAGATAGGCGAAGGAGGATTTGGTCCTGTTTACAAGGGTGTACTGTCAGATGGTGCTGTGATTGCTGTTAAACAGCTATCTTCCAAATCAAAACAAGGAAACCGCGAATTCGTTAATGAAATAGGTATGATATCGGCTCTGCAGCATCCAAATCTTGTGAAGCTTTATGGATGTTGCATTGAAGGAAACCAATTGCTGCTTGTGTACGAGTACATGGAGAACAATAGTCTTGCTCGCGCTCTTTTTGGTAAACCGGAACAGAAGTTGAACTTGGACTGGAGCACGAGAATGAAGATATGTGTCGGGATAGCAAGAGGTTTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATAGTTCACAGGGATATTAAAGCGACCAATGTCTTACTCGATAAGAATCTGAAAGCCAAGATCTCTGATTTCGGTTTAGCCAAGCTTGATGAAGAAGAAAATACTCATATCAGCACGCGAATAGCTGGGACAATAGGTTACATGGCTCCTGAGTATGCTATGCGGGGTTACTTGACCGACAAAGCAGATGTCTATAGCTTCGGAGTTGTAGCGTTAGAGATTGTCAGCGGAATGAGCAACACAAATTATCGGCCAAAAGAAGAGTTTGTTTATCTTCTTGATTGGGCCTATGTTCTCCAAGAACAAGGAACCCTTCTAGAATTGGTGGATCCAAGTCTTGCTTCAAAGTACTCACCAGAAGAGGCCATGAGAATGCTGCAATTGGCACTCCTCTGCACGAATCCATCGCCAACTCTTAGACCAACAATGTCATCTGTAGTTAGCATGCTTGAAGGAAATACACCGATTCAAGCATCGATAATCAAACGAAGCAATAGTGCAGATGGTGCAAGATTCAAAGCCTTTGAACTTCTATCACAAGATAGTCAAACTAATGTTTCATCAACATTCTTACCAAATAGTAAAGAGGGACCATGGATTGATTCTTCTGTATCTTATCCAAGTAAAGATGGTTATTCTTCATCTGATAAGCTTATTTGA 3021 0.388 MFFLMSRSFKHVSLFFFLFIAFSIFRSNAQLLPQDEVKLLQTISDKVHNLNWKVTQRSCNNGDSGFGNKIIVKDQITRNVTCDCSFNASTICHVTMILLKGLNISGVFPSEFGNLTQLKILDLTRNYLNGSIPKSLGRLPLVTMSFLGNRLSGQIPSEIGDIVTLQELNFEDNRLEGPLPSSLGNLKNLQKFMLSANNFTGPIPEAFGNLKNLTQFRIDGSSLSGKIPSFIGNWTKIERLDLQGTSMEGPIPPAISLLKNLKELRISDLKGQTTTKFPDLKDLKRMVRLELRNCLITGPIPDYIGELESLKTIDLSSNRLTGPIPDSLQDLEFESLNFVFLTNNSLSGTIPGWIVSNKQNFDLSFNNFTDAATSSCQPLDVNLASSVSPSSNTTLTCLKMNLPCSGKPRYHSLFINCGGPATEFYGNEYEADGHLRGISNFFPSDDGKWAYSSTGVFLGNERADYVASNAFSLNINGSEYYQTARIAPISLKYFGLCMMKGNYNVKLHFAEIMFSNDQTYSSLGRRIFDVSIQGFKYLKDFNIMEAAGGVGKGITKEFNVDVNQSTLEIHLSWAGKGTNAIPMRGVYGPLISAITVTPNFKIPSNGLSAGAIVGIVVGSLALIILILFVLWKMGYIFRKDQTDKELLELKTGYYSLRQIKAATNNFDPVNKIGEGGFGPVYKGVLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGKPEQKLNLDWSTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLKAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGMSNTNYRPKEEFVYLLDWAYVLQEQGTLLELVDPSLASKYSPEEAMRMLQLALLCTNPSPTLRPTMSSVVSMLEGNTPIQASIIKRSNSADGARFKAFELLSQDSQTNVSSTFLPNSKEGPWIDSSVSYPSKDGYSSSDKLI 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02320 1006 SMART serkin_6 666 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02320 1006 MobiDBLite consensus disorder prediction 973 1006 - -
Trre12g02320 1006 Gene3D Ribonuclease Inhibitor 38 165 IPR032675 -
Trre12g02320 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Trre12g02320 1006 Gene3D Phosphorylase Kinase; domain 1 633 741 - -
Trre12g02320 1006 SUPERFAMILY RNI-like 92 325 - -
Trre12g02320 1006 Pfam Protein tyrosine and serine/threonine kinase 670 937 IPR001245 GO:0004672|GO:0006468
Trre12g02320 1006 Gene3D - 411 599 - -
Trre12g02320 1006 CDD STKc_IRAK 672 939 - -
Trre12g02320 1006 Gene3D Transferase(Phosphotransferase) domain 1 742 955 - -
Trre12g02320 1006 Pfam Malectin domain 413 594 IPR021720 -
Trre12g02320 1006 Gene3D Ribonuclease Inhibitor 167 271 IPR032675 -
Trre12g02320 1006 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 637 741 - -
Trre12g02320 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase 742 949 - -
Trre12g02320 1006 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 277 372 - -
Trre12g02320 1006 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 410 599 - -
Trre12g02320 1006 Pfam Leucine Rich Repeat 309 331 IPR001611 GO:0005515
Trre12g02320 1006 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 33 270 - -
Trre12g02320 1006 SUPERFAMILY Protein kinase-like (PK-like) 650 938 IPR011009 -
Trre12g02320 1006 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 969 - -
Trre12g02320 1006 Gene3D Ribonuclease Inhibitor 272 381 IPR032675 -
Trre12g02320 1006 ProSiteProfiles Protein kinase domain profile. 666 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02320 Trre-Chr12 26515392 26525055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02320 2 997 Receptor kinase-like Gene Family AT1G53440 61.675 0.0 1218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g02320 PK_Tyr_Ser-Thr 7.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02320 - - gmx:121173337 1543.48