Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02290 ATGGCAAAAAATGCAAGACCAAAAGCACTTACTTGGGAGAAGGATAGCTCAATTTTGATCGAAGATGGCTATGAATGGAGAAAGTATGGACAGAAAAAGATAATGAATGCAAAATATCTCAGGAGCTACTACAGATGCAGTTATAAAAGTGAACAAGATTGTGCAGCTATGAAACAAGTACAAAGAATTCAAGAGGATCCTCCATTATACAGAACTACATATTATGGCCATCATAATTGCAAAACCTCTTTATCAACTTCAGATGTCACATTATTGGAACCTAACAATACTTCATCAATGATCATTAACTTCAATGATAGCTTTCAAACCAAAGAACAATTCCCTTCATTTTCATCATCATCATTTTCTAAATCCACAAAGCAGGAGCCTATAGATCAAGGGATTAATCCCTATCATAATCACATTGCTCAAAACCAATTAATCTCATCAGATTATTACCCTCTCTCATTTTGGATTTTGATTCCAAAGCATGTTTTGGTCTATAAAAGAGAGGAGGCAAATGAGGAAGATGAAGTGTCCTACTTGTGTGGTTGTTTAAAGGCCATTGCATTATCCACAGTACTTTAG 588 0.3503 MAKNARPKALTWEKDSSILIEDGYEWRKYGQKKIMNAKYLRSYYRCSYKSEQDCAAMKQVQRIQEDPPLYRTTYYGHHNCKTSLSTSDVTLLEPNNTSSMIINFNDSFQTKEQFPSFSSSSFSKSTKQEPIDQGINPYHNHIAQNQLISSDYYPLSFWILIPKHVLVYKREEANEEDEVSYLCGCLKAIALSTVL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02290 195 Gene3D WRKY domain 7 83 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g02290 195 ProSiteProfiles WRKY domain profile. 15 83 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g02290 195 SMART WRKY_cls 20 82 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g02290 195 Pfam WRKY DNA -binding domain 21 81 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g02290 195 SUPERFAMILY WRKY DNA-binding domain 17 81 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g02290 195 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 112 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02290 Trre-Chr12 25635787 25637881 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02290 11 146 WRKY Transcription Factor Family AT5G22570 40.000 7.47e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre12g02290 WRKY 5.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02290 - - gmx:102659367 166.777