Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02287 ATGGAAGAAGAACTATTAAGAGGACGTGACATGGCAAATCAAGTACTTGAAGTACTAAGTTTTGATGATATGTCAAATATTATTAGAGAAATAAAAGGGTCAAATTTGAAGTCAACATCATCATCAAAATTGTTACCCTTAAGTGTTGCTGAAGATCTTGTTCGTGAGGTACTCAAATCATTCACAAATACAATCTTGCTCTTAAACAACAATCAAGAATCTATTGATGTGGCGATTCCTATAACTGTTGGAGATGTTTTTTTGTCAACAAATTGCCACAAGTTGGAGGAGGAGGATTTAGATAGATCTTGCAAGAAACTCAAGACTCTCAACACCAACAATCCAAAAGGGTCAAACAAGAGAAAGTCAATTCCAGCAACTTGGGAAAAGACCAGCTCAATATTGATTGATGATGGTCACGCATGGAGAAAGTATGGACAAAAGAAGATAACAAATGCTAAATACTTCAGGAGCTACTATAGGTGCACATACATGAATGATCAATATTGCAAAGCAATTAAACATGTTCAAAGAACTCAAGAGAACCCTCCATTGTACCAAACTACATATTATGGCCATCACACTTGCCAAAGCTCTTTCCATTCAAACTTAAATTTGGAATCCAATTTGTCTTCTCATGACTCTTCTATATTACTTAGTTTTGATAACAATATTCTAAATAAACAAGAATACTCATTTGCACAACCACCATCGCCGCGTCTTGAATCTACAAAAGAGGAACCCAAGGAAGAGATTCATGATGATTATTTTGCTCAAAATAAGTTATTCTCACCGCAGAACATCTTATCGTGTGATTTTGAAGCTTATTTAGATTATTTGAGACATGTCACTTTGCTATCATCGGCTGAATCATTTGAGTTTGAGAATGTTTATGATCAGTTTTGA 906 0.3477 MEEELLRGRDMANQVLEVLSFDDMSNIIREIKGSNLKSTSSSKLLPLSVAEDLVREVLKSFTNTILLLNNNQESIDVAIPITVGDVFLSTNCHKLEEEDLDRSCKKLKTLNTNNPKGSNKRKSIPATWEKTSSILIDDGHAWRKYGQKKITNAKYFRSYYRCTYMNDQYCKAIKHVQRTQENPPLYQTTYYGHHTCQSSFHSNLNLESNLSSHDSSILLSFDNNILNKQEYSFAQPPSPRLESTKEEPKEEIHDDYFAQNKLFSPQNILSCDFEAYLDYLRHVTLLSSAESFEFENVYDQF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02287 301 SUPERFAMILY WRKY DNA-binding domain 132 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g02287 301 SMART WRKY_cls 136 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g02287 301 Gene3D WRKY domain 123 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g02287 301 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 31 214 IPR044810 GO:0003700
Trre12g02287 301 Pfam WRKY DNA -binding domain 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g02287 301 ProSiteProfiles WRKY domain profile. 131 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02287 Trre-Chr12 25599199 25601606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02287 46 198 WRKY Transcription Factor Family AT5G22570 37.908 5.26e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre12g02287 WRKY 4.5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02287 - - psat:127081893 305.834