Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02286 ATGGAGAATCTGGTTTGGATTCCTACAAATAGCAAAAAGGCAATGGAAGAAGAACTATTAAGAGGACGTGACATGGCAAATCAAGTACTTGAAGTACTAAGTTTTGATGATATGTCAAATATTATTAGAGAAATAAAAGGGTCAAATTTGAAGTCAACATCATCATCAAAATTGTTACCCTTAAGTGTTGCTGAAGATCTTGTTCGTGAGGTACTCAAATCATTCACAAATACAATCTTGCTCTTAAACAACAATCAAGAATCTATTGATGTGGCGATTCCTATAACTGTTGGAGATGTTTTTTTGTCAACAAATTGCCACAAGTTGGAGGAGGAGGATTTAGATAGATCTTGCAAGAAACTCAAGACTCTCAACACCAACAATCCAAAAGGGTCAAACAAGAGAAAGTCAATTCCAGCAACTTGGGAAAAGACCAGCTCAATATTGATTGATGATGGTCACGCATGGAGAAAGTATGGACAAAAGAAGATAACAAATGCTAAATACTTCAGGAGCTACTATAGGTGCACATACATGAATGATCAATATTGCAAAGCAATTAAACATGTTCAAAGAACTCAAGAGAACCCTCCATTGTACCAAACTACATATTATGGCCATCACACTTGCCAAAGCTCTTTCCATTCAAACTTAAATTTGGAATCCAATTTGTCTTCTCATGACTCTTCTATATTACTTAGTTTTGATAACAATATTCTAAATAAACAAGAATACTCATTTGCACAACCACCATCGCCGCGTCTTGAATCTACAAAAGAGGAACCCAAGGAAGAGATTCATGATGATTATTTTGCTCAAAATAAGTTATTCTCACCGCAGAACATCTTATCGTGTGATTTTGAAGCTTATTTAGATTATTTGAGACATGTCACTTTGCTATCATCGGCTGAATCATTTGAGTTTGAGAATGTTTATGATCAGTTTTGA 948 0.3492 MENLVWIPTNSKKAMEEELLRGRDMANQVLEVLSFDDMSNIIREIKGSNLKSTSSSKLLPLSVAEDLVREVLKSFTNTILLLNNNQESIDVAIPITVGDVFLSTNCHKLEEEDLDRSCKKLKTLNTNNPKGSNKRKSIPATWEKTSSILIDDGHAWRKYGQKKITNAKYFRSYYRCTYMNDQYCKAIKHVQRTQENPPLYQTTYYGHHTCQSSFHSNLNLESNLSSHDSSILLSFDNNILNKQEYSFAQPPSPRLESTKEEPKEEIHDDYFAQNKLFSPQNILSCDFEAYLDYLRHVTLLSSAESFEFENVYDQF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02286 315 ProSiteProfiles WRKY domain profile. 145 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g02286 315 Gene3D WRKY domain 137 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g02286 315 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 36 228 IPR044810 GO:0003700
Trre12g02286 315 SMART WRKY_cls 150 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g02286 315 Pfam WRKY DNA -binding domain 151 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g02286 315 SUPERFAMILY WRKY DNA-binding domain 146 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02286 Trre-Chr12 25599157 25601606 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02286 60 212 WRKY Transcription Factor Family AT5G22570 37.908 7.63e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre12g02286 WRKY 4.8e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02286 - - psat:127081893 328.946