Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02285 ATGTTGGATGTGTGTGTACTGATGAATATTCATGAACTTCGTTCAACATCCAAAATCCAGATTTGCAGAGCACTTGCTTATATTCACAACAATATTGGAGTATGTCACAGGGATGTTAAACCTCAAAATTTAATGGTCAATCCTCACACCCACCAACTGAAGATATGCGATTTTGGAAGTGCTAAAGTCTTGGTAAAGGGTGAACCAAACACATCTTACATCTGTTTTAGGTACTATAGTACTTATGGTGAACTTTTGCTTGGCCAGCCGCTCTTTCCTGGCGAGAGTGGAGATGACTAA 300 0.3967 MLDVCVLMNIHELRSTSKIQICRALAYIHNNIGVCHRDVKPQNLMVNPHTHQLKICDFGSAKVLVKGEPNTSYICFRYYSTYGELLLGQPLFPGESGDD 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02285 99 SUPERFAMILY Protein kinase-like (PK-like) 19 96 IPR011009 -
Trre12g02285 99 Pfam Protein kinase domain 19 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02285 99 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 19 80 - -
Trre12g02285 99 ProSiteProfiles Protein kinase domain profile. 1 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g02285 99 ProSitePatterns Serine/Threonine protein kinases active-site signature. 34 46 IPR008271 GO:0004672|GO:0006468
Trre12g02285 99 Gene3D Transferase(Phosphotransferase) domain 1 13 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02285 Trre-Chr12 25590633 25593430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02285 20 96 MAP Kinase Gene Family AT2G42880 36.538 1.95e-14 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trre12g02285 Pkinase 8.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02285 - - cpap:110809939 139.813