Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g02283 ATGTACAGAGAAGTGTGGTATTTATTGGTAAACTATTTCATTCTCAACAGGTCAAATGCAATTACTTGGGAGAAAGATAGCTCAATTTTGATTGAAGATGGCTATGAATGGAGAAAGTATGGACAGAAAAAGATAATGAAGGCAAAATATCTCAGGAGCTACTACAGATGCAGCTATAAATGTGAACAAGATTGTGCAGCTATGAAACAAGTACAAAGAATTCAAGAGGATCCTCCATTGTACAGAACTACATATTATGGCCATCATAATTGCAAAACCTCTTTATCAAATTCAGATATCACATTATTGGAACCTAATAATACGTCATCAATGATCATTAACTTCAATGATAGCTTTCAACCCAAAGAACAATTCCCTTCATTTTCATCATCATCATTTTCTAAATCCACAAAACAAGAGCCTATAGATCAAGTGATTAATCCCTATCATAATCACATTGCTCAAAACCAATTAATCTCATCAGAATATTACCCTCTCTCAAGTGATTATGAACTTGAATTTGATTATTTTAGGCATGCTACTATGCTATGA 552 0.3297 MYREVWYLLVNYFILNRSNAITWEKDSSILIEDGYEWRKYGQKKIMKAKYLRSYYRCSYKCEQDCAAMKQVQRIQEDPPLYRTTYYGHHNCKTSLSNSDITLLEPNNTSSMIINFNDSFQPKEQFPSFSSSSFSKSTKQEPIDQVINPYHNHIAQNQLISSEYYPLSSDYELEFDYFRHATML 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g02283 183 SMART WRKY_cls 31 93 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g02283 183 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 22 123 IPR044810 GO:0003700
Trre12g02283 183 SUPERFAMILY WRKY DNA-binding domain 28 92 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g02283 183 Gene3D WRKY domain 17 94 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g02283 183 Pfam WRKY DNA -binding domain 32 92 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g02283 183 ProSiteProfiles WRKY domain profile. 26 94 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g02283 Trre-Chr12 25519833 25520992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g02283 23 157 WRKY Transcription Factor Family AT5G22570 41.667 9.31e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre12g02283 WRKY 7.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g02283 - - gmx:102663141 175.252